1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cttgcaagtccattctggccaagaagatcatcacaaaatgttctctgcatctattttttcaagtaattaaatttttaacaagtttgtcatgcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAG
species | Glycine max |
transcript | GLYMA08G20930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTG GTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGAEST: gi|193386749|gb|FK352082.1|FK352082
genomic: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGgtaatttcaa ... gcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGA
EST: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTG GTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGAEST: gi|207749540|gb|GD720958.1|GD720958
genomic: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGgtaatttcaa ... gcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGA
EST: TTGGTTCTTGGTCTTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTG GTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGAEST: gi|16997272|gb|BM086644.1|BM086644
genomic: TTGG-TC-TGG-C-TCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGgtaatttcaa ... gcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGA
EST: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTG GTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGAEST: gi|193653480|gb|FK599478.1|FK599478
genomic: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGgtaatttcaa ... gcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGA
EST: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTG GTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGA
genomic: TATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGgtaatttcaa ... gcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGA
tgcatctattttttcaagtaattaaatttttaacaagtttgtcatgcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAG
ttttaac putative branch site (score: 2)
tgcttct putative PPT
tattttttcaagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcaagtccattctggccaagaagatcatcacaaaatgttctctgcatctattttttcaagtaattaaatttttaacaagtttgtcatgcttctgcagGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- tgcaagt
- - - - -ccattct
- - - - - - - - - ccaagaa
- - - - - - - - - - - - - - - - - - - - - ctctgca