Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttattcaatcattactcaacaaaattagcgtatattacattctcatgttatgttcatatatttgaatttatttcttgctgataatttctagcaattttttgggtttgtctggttacagGCCTTGTTGGACTTTCTCTGTCTTATGCTTTTTCATTGACAGCAACCGTAGTTTATCTGACTCGAATGTTTTGTAACTTATCAAACTATGTAATCTCTGT

Basic information

species Glycine max
transcript GLYMA08G20780.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727578|gb|BU761822.1|BU761822
EST:     CACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGGCCCCTG                         GCCTTGTTGGACTTTCTCTGTCTTATGCTTTTTCATTGACAGCAACCGTAG
genomic: CACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGGCCCCTGgtattgttat ... ctggttacagGCCTTGTTGGACTTTCTCTGTCTTATGCTTTTTCATTGACAGCAACCGTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttatttcttgctgataatttctagcaattttttgggtttgtctggttacagGCCTTGTTGGACTTTCTCTGTCTTATGCTTTTTCATTGACAGCAACCGTAGTTTATCTGACTCGAATGTTTTGTAACTTATCAAACTATGTAATCTCTGT
            tgctgat  putative branch site (score: 3)
 tttgtct  putative PPT
 ataatttcta  TA-rich tract