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gtaattagcctctctcctttgttatttaatttatgatttttatcatctactatttttttatttggtagttctgcagTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAG
species | Glycine max |
transcript | GLYMA08G20320.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAG TCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAEST: gi|298187041|gb|HO034190.1|HO034190
genomic: GATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGgtaattagcc ... agttctgcagTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAA
EST: GATGATTTAGAGTCACTTGGATATGTTCCTATGTACTTTTTAAGAGGAAG TCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAEST: gi|14990359|gb|BI316032.1|BI316032
genomic: GATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGgtaattagcc ... agttctgcagTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAA
EST: CACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAG TCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAA
genomic: CACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGgtaattagcc ... agttctgcagTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAA
ttatttaatttatgatttttatcatctactatttttttatttggtagttctgcagTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAG
atttaat putative branch site (score: 4)
taatttatgattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattagcctctctcctttgttatttaatttatgatttttatcatctactatttttttatttggtagttctgcagTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA