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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactcttctcttccatctaacattttggaaataatctgatagatatgtgacattagttaatgaattcttttgtcaaaaaagttgttataagcttgatctgacatcaatttatttgatggtccagGTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCTCTATTACTCAGCAGCATCGGGGCAATG

Basic information

species Glycine max
transcript GLYMA08G19130.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136249|gb|BU926759.1|BU926759
EST:     GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGG                         GTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
genomic: GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGGgtatgactct ... gatggtccagGTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
EST: gi|9819650|gb|BE555163.1|BE555163
EST:     GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGG                         GTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
genomic: GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGGgtatgactct ... gatggtccagGTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
EST: gi|151397861|gb|EV267734.1|EV267734
EST:     GTGGAGCATCTCAAGGCGATTACGTGTATGATGAATCTTCTGG                         GTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
genomic: GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGGgtatgactct ... gatggtccagGTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
EST: gi|10255431|gb|BE823197.1|BE823197
EST:     GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGG                         GTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
genomic: GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGGgtatgactct ... gatggtccagGTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
EST: gi|12773277|gb|BG238204.1|BG238204
EST:     GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGG                         GTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT
genomic: GTGGAGCATCTCAAAGCGATTACGTGTATGATGAATCTTCTGGgtatgactct ... gatggtccagGTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcaaaaaagttgttataagcttgatctgacatcaatttatttgatggtccagGTACTATTACAGCAGCAATTTGGGCTATTATTATGATCCAAATACAAGGCTCTATTACTCAGCAGCATCGGGGCAATG
     aaaaaagttgttataa  TA-rich tract