Sequence
atgc intronic sequence ATGC exonic sequence...atctcttatcaatcacaattttattgcttctagtaatcatggcgctataaattcttttacatatacgcttatgatgtttgtgtttattttctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACG
Basic information
species | Glycine max |
transcript | GLYMA08G17010.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G17010.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0127g00260.t01 (Vitis vinifera), 3'ss of exon 9
atctcttatcaatcacaattttattgcttctagtaatcatggcgctataaattcttttacatatacgcttatgatgtttgtgt-ttattttctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACG
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acatttttgagattccccaaaaaggatcacatgtcttttcagtgg-gtatcctcattcatgaggatgttattaaactttacaagttgtcatattcttgcagACAAGTGCCTCTTTGAAGTTCACAGTTCTGAACCCCAAGGGACGGATTTGGACTATGGTAGCAGGAGGAGGTGCAAGTGTCATCTATGCAGATACG
upper sequence: GLYMA08G17010.2 (Glycine max), 3'ss of exon 8
lower sequence: PP1S63_54V6.2 (Physcomitrella patens), 3'ss of exon 9
-----------------atctcttatcaatcac-----aattttattgcttctag---taatcatggcgctataaattcttttacatatacgcttatgatgttt---gtgtttattttctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACG
|||| || | ||| |||| | || | ||| ||| || | | ||| | || || || | || | || | || ||||| |||| ||| ||||||| || || | || || | |||||| |||||||||||||| ||||| || ||||| |||||||| || ||||||||
gtgtgattgattcatttatctaatacaagacactaccaaattcttccactccagactttaaccatcgcaattccacttcacgtgatcatttctatacagggtcttaagtagtgtttatgtggctgcagACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT
upper sequence: GLYMA08G17010.2 (Glycine max), 3'ss of exon 8
lower sequence: PP1S7_156V6.1 (Physcomitrella patens), 3'ss of exon 9
---------------------------------atctcttat-caatcacaattttattgcttctagtaatcatggcgctataaattcttttacatat--acgcttatgatgtttgtgtttattt-tctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACG
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gtatgcggcactgctctgatagtttgaggcgggctctctggtactaccaaaaccatgccgcatgtacgagct----ccctgttcgtttgtttccagtttagggcttttaattgacatagctacatgtttgattgcagACCGGTGCCTCCTTGAAATTGACAATCTTGAACCCTGAAGGCCGAATCTGGACCATGGTCGCTGGGGGAGGTGCAAGTGTTATCTACTCTGATACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataaattcttttacatatacgcttatgatgtttgtgtttattttctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACG
tttattttctgttccc CT-rich tract
attcttttacatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atctcttatcaatcacaattttattgcttctagtaatcatggcgctataaattcttttacatatacgcttatgatgtttgtgtttattttctgttcccagACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -caatcac
- - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - -catggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt