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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattataaatatatccttcataaactccagcagtcacagttcaagctattatgatttagtgtttttaatgtacgtacatatccattggtttttataatagGTAACTGGAGTAAGCATGCAGAATTTTCTCATTGGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTG

Basic information

species Glycine max
transcript GLYMA08G16870.4
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 12
tattataaatatatccttcataaactccagcagtcacagttcaagctatta---tgattta---gtgtttttaatgtacgtac----atatccattggtttttataatagGTAACTGGAGTAAGCATGCAGAATTTTCTCATTGGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTG
           ||   || | | | || ||| | ||  ||  |  |  | |   ||||| |   ||||    | | | |  |      | |   || |||   | || |||| ||||| ||||||||||| | ||||||  |||| ||  | ||  |||| ||||||||||||  ||| ||||||||||| |||||||||||||||||||
----------ctaaggttgagatagtcaagctggcattgtatatacactaaggttgattcatctgtgtccccagtttgctcattgttgtgtgtttttgttggaacaacagGTGACTGGTGTAAGCATGCAAAGTTTTCTAGTTGGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337979|gb|CO981845.1|CO981845
EST:     TCATGTACATAGTATCGGTATTCATTGGCATAGCAAATGCTCTCATGATG                         GTAACTGGAGTAAGCATGCAGAATTTTCTCATTGGAGAGAACCTTAATGGT
genomic: TCATGTACATAGTATCGGTATTCATTGGCATAGCAAATGCTCTCATGATGgtatgatgta ... tttataatagGTAACTGGAGTAAGCATGCAGAATTTTCTCATTGGAGAGAACCTTAATGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattatgatttagtgtttttaatgtacgtacatatccattggtttttataatagGTAACTGGAGTAAGCATGCAGAATTTTCTCATTGGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTG
                 ttttaat  putative branch site (score: 3)
                                           tttttat  putative PPT
        atttagtgtttttaat  TA-rich tract