1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agaaactgaaacttcatgcctgcatttgaatttccaatgaagcataacaataatattatggtatatgaacattttgataccaaaatgacttctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG
species | Glycine max |
transcript | GLYMA08G16870.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAG GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCEST: gi|11274169|gb|BF324537.1|BF324537
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
EST: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAG GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCEST: gi|6667043|gb|AW278502.1|AW278502
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
EST: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAG GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCEST: gi|27427316|gb|CA938836.1|CA938836
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
EST: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAG GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCEST: gi|18040825|gb|BM309119.1|BM309119
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
EST: AGGTTGCTCTTGTTTATGTTCTTACNAGATTGGTTCTCAACGTTTCACAG GCATACCTTGCTTTCTTTGTCATTAATGACCTACAAATGGCCCAATCAGCC
genomic: AGGTTGCTCTTGTTTATGTTCTTACAAGATTGGTTCTCAACGTTTCACAGgttagcacac ... tctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCC
aacaataatattatggtatatgaacattttgataccaaaatgacttctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG
cttctttttc CT-rich tract
taatattatggtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaactgaaacttcatgcctgcatttgaatttccaatgaagcataacaataatattatggtatatgaacattttgataccaaaatgacttctttttcagGCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG
- - - - - - - catgcct
- - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - -ccaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatacc