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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggctagaagttttttacataatttttcctagcttgtttctgatgcactttagtctcagtttattcttgaacttatcattactacttttttttattgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16770.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 3'ss of exon 8
--tggctagaagttttttacataatttttcctagcttgtttctgatgcactttagtctcagtttattcttgaacttatcatta--ctacttttttttattgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG
  |   |   || | |  ||  || |   | |  |||  ||    |   |||  |    |  | || | |  | ||||   |    |  | |||||  |||||||| ||| |||||| || || |||||  | |||   || |||||||||||||| || ||  |||| ||||||||||||||||||
gttatatgccagctgtcaaccaaaatgaactt--cttcctttgacttggcttgtgatagatataatgcct--atttattggtgggtttttatttttggttgcagATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593279|gb|DB966104.1|DB966104
EST:     ACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGTGCAACTATCCCAG                         ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
genomic: ACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgttgc ... tttattgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
EST: gi|209725513|gb|BW677810.1|BW677810
EST:     ACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGTGCAACTATCCCAG                         ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
genomic: ACAAGTTGACTCATTATCCCAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgttgc ... tttattgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttagtctcagtttattcttgaacttatcattactacttttttttattgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG
                                 ttactactttttttt  CT-rich tract
                        aacttatcattactac  TA-rich tract