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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataagcattttgtagtttcagttgtcttgctgattttgtgtaggttgtgtttctgacacaaggttgtgtttcattgcaactgcagGATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTTTCAGCCGAGAATACCTCCAAATCTGTCAGGGTGAAAAATGGTCAGCAGA

Basic information

species Glycine max
transcript GLYMA08G15920.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717259|gb|BW659001.1|BW659001
EST:     TGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCG                         GATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT
genomic: TGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCGgtaataagca ... gcaactgcagGATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT
EST: gi|15813899|gb|BI786174.1|BI786174
EST:     TGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCG                         GATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT
genomic: TGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCGgtaataagca ... gcaactgcagGATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT
EST: gi|298173446|gb|HO016782.1|HO016782
EST:     TGAAAATCTCTCCCGCAGTTACATCGCCTGCATCTGCATCTGCATCTTCG                         GATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT
genomic: TGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCGgtaataagca ... gcaactgcagGATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT
EST: gi|13481785|gb|BG511128.1|BG511128
EST:     TGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCG                         GATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT
genomic: TGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCGgtaataagca ... gcaactgcagGATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattttgtgtaggttgtgtttctgacacaaggttgtgtttcattgcaactgcagGATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTTTCAGCCGAGAATACCTCCAAATCTGTCAGGGTGAAAAATGGTCAGCAGA
                    ttctgac  putative branch site (score: 2)
                                      tttcatt  TA-rich tract