Sequence
atgc intronic sequence ATGC exonic sequencegtggtttacaaatgcttgtttgacttttgctaagtttctgtcagtgcattttgtatttattttcattgaaacctcttcatttttctatatcctagGACACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGCACAATCAA
Basic information
species | Glycine max |
transcript | GLYMA08G15360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 8
--------------gtggtttaca--aatgcttgtttgacttttg--ctaagtttctgtcag------tgcattttgtatttattttc-----attgaaacctcttcatttttctatatcctagGACACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGCACAATCAA-----------------------------------------------------
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gtaaatttggtagcaaaattagtagcaaggagtacttgattttggacccaagattcctccaaatatgctgctggctatagtcaggttccaagtattcattccgaatgctcttgttgtcccacagGATACATGCAATAGGAAAAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTG
upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G340527_T01 (Zea mays), 3'ss of exon 8
---------gtggtttacaaat----gcttgtttgacttttgctaagtttctgtcagtgcattttgtatttattttcattgaaacctcttcatttttctatatcctagGACACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGCACAATCAA-----------------------------------------------------
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gtacatttagtggctatcaaataggagtacctcctatttttgtct--cttttgccaaaagtttccagttaaggatttcttgtaatggcta---ttaactgtatgc-agGATACTTGCAATAGGAAAAGTAACCAGCAGAATCTGGGCACAATTAAATCGTCAAACTTGTGCACTGAGATAATTGAGTTTACAAGCCCTACTGAAACTG
upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 8
---------gtggtttacaaatgcttgtttgacttttgctaagt--ttctgtcagtgcattttgtatttatt-ttcattgaaacctcttcatttttctatatcctagGACACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGCACAATCAA-----------------------------------------------------
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gtacatttggtagctatcaaatagtagtaccttctagatttgtctgttttgccaaaattttccacggtaagggtttcttgtaatggcta---ttaactgtatgc-agGATACTTGCAATAGGAAAAGTAACCAGCAGAATCTGGGCACAATTAAATCGTCAAACCTGTGCACTGAAATAATTGAGTTTACAAGCCCTACTGAGACCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcagtgcattttgtatttattttcattgaaacctcttcatttttctatatcctagGACACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGCACAATCAA
cctcttcatttttcta CT-rich tract
attttgtatttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggtttacaaatgcttgtttgacttttgctaagtttctgtcagtgcattttgtatttattttcattgaaacctcttcatttttctatatcctagGACACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGCACAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA