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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctcctaacttttatcccatgttttccaagtcacgttcatttgtttaggatttccttgtcatttggtgtacctgttatatgtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGGCCTCTGGGAAA

Basic information

species Glycine max
transcript GLYMA08G15340.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15340.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 8
------gtatgttctcctaacttttatcccatgttttccaagtcacgttcatttgtttaggatttccttgtcatttggtgtacctgttatatgtgtgccta-gGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGG--CCTCTGGGAAA
       |   |  |   ||  |  ||| |||   | |  || |  | | || |   ||  ||  | || |    || |||   ||| |  || | |   | || || |  |||| |||||||||||||||||||| ||||| |||||| |  | |||||    | ||||   || ||||| || ||||||   |  || |||  
gtacagttgaatgtttgcaaaatggatctcataactcc--aggctggcttatctcaata--atcactttttttcctgttgtga-tgtgacgtgggggaaaaagGTTATTGCTGAAGCAGCTGGTTACCATGGAGGTCATCCAGTGGACAGCATTGTGGGAATTCTCTAAGCACGAATTTGAAAACGAGAAGAATCTGCTAGGA--

upper sequence: GLYMA08G15340.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------gtatgttctcctaacttttatcccatgttttccaagtcacgttcatttgtttaggatttccttgtcatttggtgtacctgttatatgtgtg--cctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGGCC---TCTGGGAAA
                              | ||   |  | |  |  ||   || | ||| |       ||   |||||      ||| || |  |||  | ||    ||   ||| |   |  ||| | ||  |||||||| |||| |||||||||||||||||||||| || ||| ||| |||  | ||||  ||| ||||| || ||||||  |     ||||   
gcatgtctcttgtgctttttgtgcatctcctgtgggtttttcatctacatttaatttattctatacattcttttattgttatttgattctttttttttttttttaatcatttgttgtattatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTTTGGAATATGTTTAAGGATGAATTTGAAAACGAGAAGAACATGCTTGGG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193639745|gb|FK593966.1|FK593966
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGTTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|9903102|gb|BE612070.1|BE612070
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|192296110|gb|FG989470.1|FG989470
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTCGAAACAGC
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGC
EST: gi|7640049|gb|AW734358.1|AW734358
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|151409280|gb|EV279088.1|EV279088
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|26057523|gb|CA800437.1|CA800437
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|21638863|gb|BM139909.1|BM139909
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
EST: gi|17022111|gb|BM093145.1|BM093145
EST:     CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAA                         GCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT
genomic: CTCAATTCCACCTTGGCGGATAAGAATCTATCTGAGATTCCAAACTTCAAgtatgttctc ... gtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatttgtttaggatttccttgtcatttggtgtacctgttatatgtgtgcctagGCTACTCTTGAAACAGCTGGTTACCATGGAGGTTATCCAATGGACAACTCTATGGGATACATATAAGAGTGATTTTGAGAATGAGAAGGCCTCTGGGAAA
                                     tgttatat  TA-rich tract