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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttgtgtcccgatctctcaacttagatgcagactccagattttattttggagcctttttccaagcaaaatagccattgcatttcactgactattctccgcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATTGTGCATAGCATGAAATGAAATCTTCGATATTGGAACCAAATTACTACAA

Basic information

species Glycine max
transcript GLYMA08G14850.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707263|gb|BW670582.1|BW670582
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
EST: gi|58017612|gb|CX704354.1|CX704354
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
EST: gi|208074586|gb|GD872479.1|GD872479
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
EST: gi|208203048|gb|GD997480.1|GD997480
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
EST: gi|58024685|gb|CX711426.1|CX711426
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
EST: gi|16349066|gb|BI974661.1|BI974661
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGNTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
EST: gi|207696345|gb|GD677812.1|GD677812
EST:     CTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
genomic: CTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
EST: gi|209707420|gb|BW670659.1|BW670659
EST:     CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAG                         ATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT
genomic: CAATGTTTTCAGGATCAAGCCACCAATGTGTTTCTCCAAAGATGATGCAGgtatggttgt ... gcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttccaagcaaaatagccattgcatttcactgactattctccgcgtgtgcagATTTTCTTGTGGATGCCTTGGATTATTCTCTATCAAAGTTGTGAGCTGATTGTGCATAGCATGAAATGAAATCTTCGATATTGGAACCAAATTACTACAA
                              cactgac  putative branch site (score: 2)
                                       ttctccgc  putative PPT
            aaaata  TA-rich tract