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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagcacatgtgttctgattaaaaactattatttttccatctaaaacaaatttagaaagtttaattttgggctaactaaaggaaagtttatgtgaaacagGCTGATCATCTACGACAAGAAACATTGAGGCAAATGTATCGAATACTTACCACACGTCAGACTGGTCGATTTCTGCTTGATTTGGGTGAATATTTTCAAC

Basic information

species Glycine max
transcript GLYMA08G14840.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344584|gb|CO985317.1|CO985317
EST:     TGGATACTGCAATGGAGAGACTAGAAGCACTTGTGAGCTTTGTGAACCAG                         GCTGATCATCTACGACAAGAAACATTGAGGCAAATGTATCGAATACTTACC
genomic: TGGATACTGCAATGGAGAGACTAGAAGCACTTGTGAGCTTTGTGAACCAGgtaatgtatg ... tgtgaaacagGCTGATCATCTACGACAAGAAACATTGAGGCAAATGTATCGAATACTTACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaatttagaaagtttaattttgggctaactaaaggaaagtttatgtgaaacagGCTGATCATCTACGACAAGAAACATTGAGGCAAATGTATCGAATACTTACCACACGTCAGACTGGTCGATTTCTGCTTGATTTGGGTGAATATTTTCAAC
                            aactaaa  putative branch site (score: 2)
     tttagaaagtttaatt  TA-rich tract