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gtatgatataattcatttatataatttttatataacatcagtgaattcaagggttttgtaaggaaatacaaattcatttttaattgttttacttccattccagatacgtaagtaatacatgattcaattgaccagtttctcaattgcatgtgacttcatagactcttccatattacaattttatattaattaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCT
species | Glycine max |
transcript | GLYMA08G14780.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|192331294|gb|FK021005.1|FK021005
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|57574219|gb|CX547194.1|CX547194
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|192320791|gb|FK013881.1|FK013881
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|192320790|gb|FK013880.1|FK013880
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTTTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|58022603|gb|CX709344.1|CX709344
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|192331184|gb|FK020951.1|FK020951
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|58018279|gb|CX705021.1|CX705021
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCEST: gi|192331185|gb|FK020952.1|FK020952
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
EST: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGG GGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
genomic: TTGTTGCTTGACAAGTTCAAATGGGGCCATGCTTTTATGTCTCTGAATGGgtatgatata ... attaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATC
ttgcatgtgacttcatagactcttccatattacaattttatattaattaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCT
tcttccatattacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatataattcatttatataatttttatataacatcagtgaattcaagggttttgtaaggaaatacaaattcatttttaattgttttacttccattccagatacgtaagtaatacatgattcaattgaccagtttctcaattgcatgtgacttcatagactcttccatattacaattttatattaattaatgcagGGAATTACTGAGGGCCTACTCCAAATGCCAAAATAGTGCTGAAATTATATCTGTTCAAAATGCTTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA