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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtataatgtatctgattcataattgttcagtgaattttttcatcccccctttgattaattttctcaaattgtgtgaacaacaattattaaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTAAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA

Basic information

species Glycine max
transcript GLYMA08G14670.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14670.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 3'ss of exon 9
gtaagtataatgtatctgattcataattgttcagtgaattttttcatcccccct-ttgattaattttctcaaattg-tgtgaacaacaatt-attaaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTAAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
   | |   | | |    |   ||   |||| |||   | ||   || |    |  |||  |||  | | |||||| || | |      || || ||| | |||||||| ||  | || |||||||| ||||||||| | |||||| | || |||||||| |||||||| ||||| ||||||||| | || |||||||||||||
---acttgcaggaacaaaacaaatttctgtt-agtttctgttgcaatgcaatgtgctgaaaaatcatttgaaattgatgaggagtttggttgatgaaactgcagGTTCCCCCAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACA

upper sequence: GLYMA08G14670.2 (Glycine max), 3'ss of exon 9
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtataatgtatctgattcataattgttcagtgaattttttcatcccccctttgattaattttctcaaattgtgtgaacaacaattattaaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTAAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
||||| | ||     | ||  || ||   |   |||   |||||||  ||       |   | || ||  ||     | |    || | | | |||  |||||||| ||  | |||||||| ||||||||  |||| || ||||| || ||||| || ||| | || || |||||||||||| | ||||||||||||||||
gtaagcaaaa-----ccgaagcaaaacatt---gtgccgtttttcaatcct------agcgacttcctttaa---catcactttcattcaatgaat-gcagGTTCCTCCTGGCACGCCAGTTGTTAATGCTTTGTCGAAACAGCGTGCAATGCTTGAGAACGTACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAACAACA

upper sequence: GLYMA08G14670.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
-----gtaagtataatgtatctgattcataattgttcagtgaattttttcatcccccctttgatta--attttctcaaattgtgtgaacaacaattattaaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTAAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
       |||| | |  | |||  ||   |||  | |   |||| |     |      |   ||||  || || | |  || |||          |||||||  ||||||||||||  | || |||||||| ||||||||| | |||||||| || ||||| || ||||| |||||||||||||||||||| ||||| ||||||||||
gacatcaaagttttacct-tcttgtttggaat-atgcgaggaatgtagagttagttgatagcattatgatgttgtaacgttttgttggtg-----tattaaaa-acagGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605153|gb|DB982221.1|DB982221
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTC                         CTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|209707639|gb|BW683432.1|BW683432
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|10846908|gb|BF069755.1|BF069755
EST:     CTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|14999986|gb|BI320800.1|BI320800
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|14206199|gb|BG839877.1|BG839877
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|10232086|gb|BE800974.1|BE800974
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|51337208|gb|CO981074.1|CO981074
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|20813067|gb|BQ297545.1|BQ297545
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|209729558|gb|BW655147.1|BW655147
EST:     GTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: GTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|6912982|gb|AW394570.1|AW394570
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|22524239|gb|BU083050.1|BU083050
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|15287268|gb|BI471159.1|BI471159
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|10231637|gb|BE800525.1|BE800525
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|208185882|gb|GD985391.1|GD985391
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|213597145|gb|DB977639.1|DB977639
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|15204316|gb|BI427084.1|BI427084
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|26058223|gb|CA801137.1|CA801137
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCCAGGCCCCTCTG                         GTTCCACCGAGTACCCCAGTGGTTAATGCACTGTCAAAACAGCCAACTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|6071287|gb|AW100674.1|AW100674
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|14195821|gb|BE657641.2|BE657641
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|26059654|gb|CA802568.1|CA802568
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|31310622|gb|CD395825.1|CD395825
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|214008105|gb|DB988492.1|DB988492
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|14259830|gb|BG882738.1|BG882738
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCA
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCA
EST: gi|15285683|gb|BI469574.1|BI469574
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|120494127|gb|EH222294.1|EH222294
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GT-CCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|120494362|gb|EH222529.1|EH222529
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|151403113|gb|EV272923.1|EV272923
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|17519636|gb|BM188678.1|BM188678
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|9259624|gb|BE347771.1|BE347771
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|10232107|gb|BE800995.1|BE800995
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|22523537|gb|BU082348.1|BU082348
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|213606697|gb|DB983772.1|DB983772
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|22525964|gb|BU084775.1|BU084775
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|120528740|gb|EH256874.1|EH256874
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|10231358|gb|BE800246.1|BE800246
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|12688466|gb|BG154802.1|BG154802
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|209726026|gb|BW654798.1|BW654798
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|120493272|gb|EH221439.1|EH221439
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|120492885|gb|EH221052.1|EH221052
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|209715601|gb|BW677196.1|BW677196
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|14206213|gb|BG839891.1|BG839891
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|9901828|gb|BE610796.1|BE610796
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGCCAAAGCATCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|20448975|gb|BQ253099.1|BQ253099
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|14011829|gb|BG726751.1|BG726751
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|120492542|gb|EH220709.1|EH220709
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
EST: gi|10843347|gb|BF066650.1|BF066650
EST:     CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG                         GTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG
genomic: CATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGgtaagtataa ... taaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccccctttgattaattttctcaaattgtgtgaacaacaattattaaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTAAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA
          gattaat  putative branch site (score: 3)
       tttgattaattttctc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtataatgtatctgattcataattgttcagtgaattttttcatcccccctttgattaattttctcaaattgtgtgaacaacaattattaaattacagGTTCCACCGAGTACGCCAGTGGTTAATGCACTGTCAAAGCAGCGAGCTATGCTGGAAAACATCCTAAGGGCTTGTGTTGGATTAGCTCCTGAGAACAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA