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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA

Basic information

species Glycine max
transcript GLYMA08G14670.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G010768_T01 (Zea mays), 3'ss of exon 2
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatga-gtttatggcttta-acagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA
    |  | |     |  |   | | |  | || |  | ||   |   |  |   ||    |   |||  | | || | |  | |||  ||||  ||||||||||| |||||||| || || |||||||| || ||||| |||||||| || |||                                     
----gtaagagcccaccaagtgaataacccaaagca-tgttaggtgattcaacgcttcagcaccatcatctaatgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------

upper sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 6
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagac-tcaaatga-gtttatggcttta-acagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA
    |  | |     |  |   | | | || || |    |   | ||  | ||   || |    | |||  | | || | |  | |||  ||||  ||||||||||| |||||||| || || |||||||| || ||||| |||||||| || |||                                     
----gtaagagcccaccaagtgaataactcgaagcatgctaggtgat--tcagcgcttcagcaccatcatctaatgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------

upper sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 8
gtttgccatatgttgcttaaccattcattccaacct--ctatttcttatctttagttttttaaagactcaaatga-gtttatggcttta-acagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA
       |   |      ||  || |    ||  ||   |  |||    |||  |   |    |   |||  | | || | |  | |||  ||||  ||||||||||| |||||||| || || |||||||| || ||||| |||||||| || |||                                     
-----gtaagagcccacgaataatccgaagcatgctgggtgattcagcgcttcggcaatcagcaccatcatctaacgtctctctcattatgcagGACAAGTTCCACTCCTTCCACCCGGTGGCCACCATCCTTAGCTACCTCACCAAGGCACCACTG-------------------------------------

upper sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 6
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA
|||||   |  |||  |||   |   |    |||      ||  |   |||  |||||| | |  |     || | |||  || |  ||||| ||||| ||||| |||||||| || || ||||| ||||||||||| || ||||| ||||| |||            | | |   |||   |     ||
gtttgtattccgttagttagttaccaaga--aactcgagattggtgagtttttttttttcatgttt-----gaatctatt-ctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGA

upper sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaa--atgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA
|| ||   | |  ||| |      | ||   | |||||   | |  | ||||   |   |  || | |   ||  | |  |   |||  ||||  ||||| || || |||||||||||||| ||||||||||||||||| |||||||||||||||                                     
gtctgttttcttctgcatc----cttatgggaccctcttgctttggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233961|gb|BE802849.1|BE802849
EST:     TACTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAACCTGAAAATGAG                         G-AAAGTTC-ACTCATTCCAC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCAC
EST: gi|120528737|gb|EH256871.1|EH256871
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120528747|gb|EH256881.1|EH256881
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|20448975|gb|BQ253099.1|BQ253099
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|120494127|gb|EH222294.1|EH222294
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGACAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|14259830|gb|BG882738.1|BG882738
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
EST: gi|8402389|gb|BE058023.1|BE058023
EST:     TCCTTCTTGCTGAGCTGAGCACTCGAATCGAGTGTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGGTGCGACCATACTCAGTTACCTGACG
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGAC-
EST: gi|15204497|gb|BI427265.1|BI427265
EST:     TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTTAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgccata ... gctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA
     ttcttatctttagttt  TA-rich tract