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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttcactacaaactgattctattctctctattttcttgcatttgtgcctcagtttctttcttttgattgagcacttttcgacttgctttgctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAGTTGCTCATGAACCTAGCTTTGTGAACACTGCACCTGGACCCCACATTAG

Basic information

species Glycine max
transcript GLYMA08G13450.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209705854|gb|BW675959.1|BW675959
EST:     TCCCAGACTAATGCAGCCTCCACATAGCTTACCCTCTGAAGATG                         ATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
genomic: TCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacct ... gctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
EST: gi|17964406|gb|BM271141.1|BM271141
EST:     GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATG                         ATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
genomic: GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacct ... gctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
EST: gi|51343270|gb|CO984003.1|CO984003
EST:     GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATG                         ATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG
genomic: GGAACCTCCCAGACTAATGCAGCTTCCACATAGCTTACCCTCTGAAGATGgtaaatacct ... gctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctcagtttctttcttttgattgagcacttttcgacttgctttgctttactagATGCACACAAACAAGGGGAGCAGTTGATTATTCCTAAAGGCTTGTTATTAGTTGCTCATGAACCTAGCTTTGTGAACACTGCACCTGGACCCCACATTAG
                ttttgat  putative branch site (score: 4)
                                         ctttgcttt  putative PPT
            tttctttt  TA-rich tract