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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaattgctgttaccacatgttaggtttctaaggtcatatcactcttttcataagaaatcaactcaataaaatctgtatttcagGTTCTTGGCACACCCGCTCAGGAGGAAGTTTCCTGTACGAATCCAAACTACAATGATTTCAAGTTTCCACAG

Basic information

species Glycine max
transcript GLYMA08G12370.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208147259|gb|GD944940.1|GD944940
EST:     CCTTATTTCCTGGCGAAAATGCAGTGGACCAGCTTGTAGAGATTATCAAG                         GTTCTTGGCACACCCGCTCAGGAGGAAGTTTCCTGTACGAATCCAAACTAC
genomic: CCTTATTTCCTGGCGAAAATGCAGTGGACCAGCTTGTAGAGATTATCAAGgtgcaattgc ... tgtatttcagGTTCTTGGCACACCCGCTCAGGAGGAAGTTTCCTGTACGAATCCAAACTAC
EST: gi|208071419|gb|GD872222.1|GD872222
EST:     CCTTATTTCCTGGCGAAAATGCAGTGGACCAGCTTGTAGAGATTATCAAG                         GTTCTTGGCACACCCGCTCAGGAGGAAGTTTCCTGTACGAATCCAAACTAC
genomic: CCTTATTTCCTGGCGAAAATGCAGTGGACCAGCTTGTAGAGATTATCAAGgtgcaattgc ... tgtatttcagGTTCTTGGCACACCCGCTCAGGAGGAAGTTTCCTGTACGAATCCAAACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaggtcatatcactcttttcataagaaatcaactcaataaaatctgtatttcagGTTCTTGGCACACCCGCTCAGGAGGAAGTTTCCTGTACGAATCCAAACTACAATGATTTCAAGTTTCCACAG
                                    aataaaatctgtattt  TA-rich tract