1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctagaagatgaagacaaatttaagtttttatcaactgtatattttgctattagactgcttttacaagttgtttttttcataatggtgatccactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGCCTCCTTGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAATTATC
species | Glycine max |
transcript | GLYMA08G11760.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAG GAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGCEST: gi|8401709|gb|BE057343.1|BE057343
genomic: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAGgtacaattca ... cactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGC
EST: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAG GAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGCEST: gi|31468589|gb|CD410617.1|CD410617
genomic: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAGgtacaattca ... cactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGC
EST: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAG GAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGCEST: gi|193352730|gb|FK317238.1|FK317238
genomic: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAGgtacaattca ... cactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGC
EST: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAG GAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGCEST: gi|193332650|gb|FK297792.1|FK297792
genomic: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAGgtacaattca ... cactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGC
EST: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAG GAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGC
genomic: ACAGCCTTCACATTTGGGACACTCTTTTAAGCGATCCAGATGGTCCTCAGgtacaattca ... cactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGC
gctattagactgcttttacaagttgtttttttcataatggtgatccactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGCCTCCTTGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAATTATC
tccactct CT-rich tract
ttgtttttttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagaagatgaagacaaatttaagtttttatcaactgtatattttgctattagactgcttttacaagttgtttttttcataatggtgatccactctgcagGAGACTCTTCTTCGGGTATGCTGTGCAATGCTGGTTCTCGTTCGTAAGCGCCTCCTTGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAATTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - aagacaaa
- - - - - - - - - - - - - - - -caactgt
- - - - - - - - - - - - - - - - - - - - - - tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -actgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggtg