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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcccctttcaaagattcaaagcaataactgaattcatacaccattatcttgacacaacttatttgcatgtcattcatatcaagGCTAACACTGAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCTGGGGCTATAGATTGTCATGTGTATTATATATGCCCTCAATTAGTAGATGAGGCCA

Basic information

species Glycine max
transcript GLYMA08G10850.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10850.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagttcccctttcaaagattcaaagcaataactgaattcatacaccattatcttgacacaacttatttgcatgtcattcatatca--agGCTAACACTGAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCTGGGGCTATAGATTGTCATGTGTATTATATATGCCCTCAATTAGTAGATGAGGCCA
             | |   |||  |    ||||   |    | | |||||| |   |     ||||| || | | |  || || |    ||  ||| ||||| |||||||||||||||||  |||||||||| || || ||||| |||||||||||  |||  ||||| |||||||| ||  |||| ||  
------------gtaatttatttcactgtataaaacacagtaaataccattttggagtacttacttactttc-tcttgtttattttcttagAATAAGACTGAGGTTATTGCTGGAGAAGGAATGATTGTAACTGCAGGAGCTATTGATTGTCATGTACATTTCATATGTCCTCAATTGGTGTATGAAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattcatacaccattatcttgacacaacttatttgcatgtcattcatatcaagGCTAACACTGAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCTGGGGCTATAGATTGTCATGTGTATTATATATGCCCTCAATTAGTAGATGAGGCCA
                  tcttgac  putative branch site (score: 3)
                           aacttattt  TA-rich tract