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gtaccttgtggggtttatatagacgagttcttttctcatattccagtctgaaatgctgacttagactgcattttttttaatattatttacatattggttggtcaaaattgaatatattggattttttttattcagCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTG
species | Glycine max |
transcript | GLYMA08G09170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAG CTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTEST: gi|10235209|gb|BE804156.1|BE804156
genomic: GTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGgtaccttgtg ... ttttattcagCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGT
EST: GTAGCCAAAG-CTCCTGATGGGGAATGGTGGA-TGTTTTCAG CTCTTGAAATCTACCAATTTATTGEST: gi|151397105|gb|EV266978.1|EV266978
genomic: GTAGC-AAAGGCTCCTGATGGG-AATGGTGGAGTGTATTCAGgtaccttgtg ... ttttattcagCTCT-GAAATCTACCAAATTATTG
EST: GGGAATGGTGGAGTGTATTCAG CTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTEST: gi|254329705|gb|GR839258.1|GR839258
genomic: GGGAATGGTGGAGTGTATTCAGgtaccttgtg ... ttttattcagCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGT
EST: GTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAG CTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGT
genomic: GTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGgtaccttgtg ... ttttattcagCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGT
tattatttacatattggttggtcaaaattgaatatattggattttttttattcagCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTG
ttttttttattc CT-rich tract
tcaaaattgaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttgtggggtttatatagacgagttcttttctcatattccagtctgaaatgctgacttagactgcattttttttaatattatttacatattggttggtcaaaattgaatatattggattttttttattcagCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA