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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggcattgtgagagaaatttgctgtgaagtttaaactaccaaagttcctgatattgtactgaacctttatttatttttctaactagtggcttttattgtgcaattctacagTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTG

Basic information

species Glycine max
transcript GLYMA08G08920.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g39850.1 (Oryza sativa), 3'ss of exon 8
gtaagtggcattgtgagagaaatttgctgtgaagtttaaactaccaaagttcctgatattgtactgaacctttatttatttttctaactagtggcttttattgtgcaattctacagTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTG
                  | || ||  | | |  | |   |  |     ||  ||   |  || ||  | |  ||||     ||| | || |   ||||     ||  |  |||||||||| ||||||||||| |||||||| || || || || ||||| || || || || || |||||| | |||||||||||  | ||||||||||||||||
------------------gtaagttcttattatttctcgtccgctgct-tttatggcgtgataatgttcttgcattt-----tctga-taataatttttg----gctgtgttacagTATGACCGTTCATTGACACCAACCAAGAACATTGGGCTTCCAGATTCATTACTCTCACGTTTTGATTTGCTTTTTATTGTTCTTGATCAAATGGATCCTG

upper sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G162445_T01 (Zea mays), 3'ss of exon 8
gtaagtggcattgtgagagaaatttgctgtgaagtttaaactaccaaagttcctgatattgtactgaacctttatttatttttctaactagtggcttttattgtgcaattctacagTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTG
                      |  ||| | |   || |  | ||    | | | |   ||| |       || |||  | ||      | |   ||||  | |   |     |||||||||||||||||||||||||| || ||||| || || || || ||  ||||||| || |||||| |||||||||||||  | ||||||||||||||||
---------------------gtaagctcttataatttatttccct---tccataactgtgttcctcttgattgtttgctgtttctgacaatattttttggtttatga-----cagTATGATCGTTCATTGACTCCAACAAAGAATATTGGGCTTCCTGATTCACTGCTTTCCCGTTTTGATTTACTTTTTATTGTTCTTGATCAAATGGATCCTG

upper sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G100639_T01 (Zea mays), 3'ss of exon 8
gtaagtggcattgtgagagaaatttgctgtgaagtttaaactaccaaagttcctgatattgtactgaacctttatttatttttctaactagtggcttttattgtgcaattctacagTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTG
                      |  ||||  ||| |   |  |      |  ||       || |    ||| |||  ||  | |  ||     |  ||  || ||  |   ||||||||||||||||||||| ||||| || |||||||| || || || ||  ||||||| || |||||| |||||||||||||  | ||||||||||| ||||
---------------------gtaagctgctaagctcttatcatgtctttcacttgctccatagtacctcttgattgtttgctatttctgacaacaattcctg-gctttatgacagTATGATCGTTCATTGACACCAACAAAGAATATCGGGCTTCCGGATTCACTGCTTTCCCGTTTTGATTTACTTTTTATTGTTCTTGATCAAATGGACCCTG

upper sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G46280.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtggcattgtgagagaaatttgctgtgaagtttaaactaccaaagttcctgatattgtactgaacctttatttatttttctaactagtggcttttattgtgcaattctacagTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTG
                   || ||  |   |||||||      || ||  | ||  || | |||||| |   ||||| ||| ||   ||| |  ||  | |||     | || ||||||||  | ||| |||||||||| || || || ||||| ||||| ||  |||||||||| ||||||||||| |||||||||||||||||||||||| |||
-----------------gtaagttctcaccgaagtttt-----cctaatctact--tactctactga-ctagtatttttttgtc---ctaatacctactcttgc----tcctgcagTATGACAGATCACTGACTCCAACAAAGAACATTGGACTTCCAGATTCGCTGCTTTCTCGTTTTGATCTACTGTTTATTGTGTTGGATCAAATGGATGCTG

upper sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S9_156V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------gtaagtggcattgtgagagaaatttgctgtgaagttta-aactaccaaagttcctg-------atattgt-actgaacctttatttat---ttttctaactagtggcttttattgtgcaattc-------tacagTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTG
           |||  ||     | |  ||| |||| |    || || |    || |||| |   ||       | | ||| | || |  ||     ||   |  |||   |||  ||  |||    | || |        ||||||||||||| ||  | || || ||||||||||| ||||| || || || ||||| || |||||||| || ||||| || ||| |||||||||||||||| |
gtaagtgctaagtatctgcttcggagtcagatatttacatccaaattcacggatagcaaaatgtatgtggagggaaaatgtgaatgtatgttctggcatacatgatctctgtagatgcaattaacacgaaagttgatggtgtacagTATGATCGATCGCTTACACCGACCAAAAATATTGGACTGCCCGATTCATTGCTGTCACGATTTGACCTGCTTTTCATAGTGCTGGATCAAATGGATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgaacctttatttatttttctaactagtggcttttattgtgcaattctacagTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTG
                    ttctaac  putative branch site (score: 1)
         tttatttatttttcta  TA-rich tract