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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT

Basic information

species Glycine max
transcript GLYMA08G08730.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 3'ss of exon 7
gtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
                ||  || | |      || |     | |   || |    ||||    | ||       |   | ||| | || |    |    |||||      |||||||||||||| |||| ||||| ||||||||||||||||| ||||| ||| ||||||| || ||||| || |||||||| ||||||||||| ||||| ||| 
--------------gtttccatcctagcccaatt-atccaatgttgtttcttaccccttgatttgttgtaaccatcttagaaatactaaagaccatcttttaaa------tgcagATGATGTGGAGGCTAAATTTCTTTGTGGCCTTCTGTTGCATTGTCCTTGACAATGATTACATGCTGTATTATATATGTCCAATGCACACACTTTTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g44040.2 (Oryza sativa), 3'ss of exon 7
gtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatac-ctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
||   | ||  ||| ||| ||  ||| | || | ||  || ||       | ||   | ||   ||| |  |  ||  ||  |   | ||| || ||      |  | |  |||||||||||||| | ||||||||||||||||| ||||| || ||||| ||| ||||||| || |||||||| || |||||||||||||||||  | || ||| 
gtgccattc--tgatctttaaccccaatctgttctatatgatac------tttagtatgttttcatttccttgatttaatgcatggtttacactgacaaccatatttctaatgcagATGATGTGGAGACTTAATTTTTTTGTGGCTTTCTGCTGCATTGTCCTTGACAATGATTACATGCTCTATTACATATGCCCAATGCACACTTTGTTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G463445_T01 (Zea mays), 3'ss of exon 2
gtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||| | ||||    |||   ||| || || ||| |  |   || | ||||  || ||||||||||| || | ||||| |||||||| |||||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
gtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaccaa--taactatactttccatgtagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: AC218988.3_FGT003 (Zea mays), 3'ss of exon 2
gtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||  | ||||    |||   ||| || || ||| |  |   || | ||||  |||||||||||||| || | ||||| |||||||| |||||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
gtgtctatgctacctcatcagtcttattttgtgctatgccctaatgagtttagtctcctgtattttttgttaccgccttt---taagcactagaccaa--taactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G458538_T01 (Zea mays), 3'ss of exon 2
gtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||| | ||||    |||   ||| || || | | |  |   || | ||||  |||||||||||||| |  | ||||| |||||||| |||||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
gtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaacaa--taactatactttccatgcagATGATGTGGAGATTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G147351_T01 (Zea mays), 3'ss of exon 1
gtaagagtcattgaccttaaataccattttgcttta---cttggtatccattgtctatcct-tttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
||     |  |    | | | |   ||||||   ||   | |  |     | ||||    | |||| | ||||    |||   ||| || || ||| |  |   || | ||||  |||||||||||||| || | ||||| |||||||| |||||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
gtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaccaa--taactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 2
------gtaagag-tcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
       |   |  ||||    ||||  | |   | ||   || |  || |   |   || |   |||| | ||||    |||   ||| || || ||| |  |   || | ||||  |||||||||||||| || | ||||| |||||||| |||||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
gtgcctatgctacctcatcagtcttattttctgctatgtcctaatgagt-ttagtctcctgta--tttcttgttaccgccttt---taagcactagaccaa--taactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTCTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: AC208418.3_FGT009 (Zea mays), 3'ss of exon 3
gtaagagtcattgaccttaaataccattttgctttacttggta-tccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttct-tgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
||     |  |    | | | |   ||||||   ||  |  || |   ||   | |||| |   | ||  |         ||| || || ||| |  |   || | ||||  |||||||||||||| || | ||||| |||||||| || ||||| ||||| ||| |||||||    |||||||| |||||||||||||||||||| || || ||| 
gtgtctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtattttttgttaccgccttttaagcactagaccaa--taactatactttccatgcagATGATGTGGAGGTTAAATTTCTTTGTGGCATTTTGTTGCATTGTCCTTGACAATGATCTCATGCTCTATTATATATGCCCAATGCACACACTATTTACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
                              |   |||     || ||||    |      ||   | | | |  ||| |||| |     | ||||    ||    | ||||||||||||||||| |||| || || ||||| || || || |||||||| || ||||| ||||||||| | ||||| || |||||||||||||| ||||||||  
------------------------------gtgataca----attcattccacaaaaagctctcgtcattgtacttg-ataatc--cgcatctaaaatcttggt-tctcttgcagATGATGTGGAGGCTGAACTTCTTTGTAGCGTTTTGCTGTATTGTTCTCAACAACGACTATATGTTATACTACATCTGCCCAATGCACACTCTTTTCACCC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagagtcattgaccttaaataccattttgctttact-tggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
      ||||||    ||  | |     ||  || ||  || |||    ||  | |      | | ||  | |   ||  | || |   |    ||  | || |   ||||| |||||||||||||| ||||| || |||||||| ||  | || ||| | || || ||||| |||||||| ||||| || || ||||||||||| || |||||| 
------gtcatttcaattgcacagttaattagttgaccatgatata---tgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaactttta--cttcttccagATGATGTGGCGTCTTAACTTATTTGTGGCGTTTAGCTGCATTATTCTCAATAATGATTATATGCTGTACTACATCTGTCCAATGCACACTCTGTTCACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G29890.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagagtcattgaccttaaataccat--tttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatataccta-actcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
|| |||   | |    |  |  |||||  |||| |    ||   ||    |||   |         | || | | |||  |    ||| ||   ||     | |   | ||  | |||||||||||||||||||| ||||||||||| || ||||| ||| | || ||||||||||||||||| ||||| || || ||||||||||| || |||||  
gtcagatcaactattttcgatcaccatagtttgttcagtttaccatgtgatgttcttttagagagcacta-tgtctttcaaagctcaagatttttatgaaagcttttacttaatccagATGATGTGGCGGCTTAACTTTTTTGTGGCGTTTTGTTGCATTATTCTCAACAATGACTATATGCTGTACTACATCTGTCCAATGCACACTCTATTCACGC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 3'ss of exon 2
gtaagagtcattgaccttaaa---taccatt-ttgctttacttggtatc-cattgt--ctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
|| |   |  || |   | ||   |  |||  || || || | |   |   |||||  || | | ||| ||||   ||  |||  ||||   |   |  | | || |||   | |  ||||||||||||||||||| ||||| |||||||| || || || ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||| 
gtgacc-ttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataattta-ggatgtgaatctttactttctaatgcagATGATGTGGCGGCTAAATTTCTTTGTGGCATTTTGCTGCATTGTTCTTAACAATGACTACATGCTATACTATATCTGCCCCATGCACACGCTTTTCACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S357_34V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------gtaagagtcat-tgaccttaaataccattttgcttt----acttggtatccat-tgtctatccttttcctattactctttttgcataaacaata---tacctaactcgt--taaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
                                  ||||   |  |  |   |  | |   |   || |||    |||  | || ||  |||  ||     |||  ||| | |||||  | || | |     ||||| | | ||  |  |   | |  ||||||||||||||||| |||||| | ||   |||    ||||| ||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||||||| 
gtatgtatgagcgtcttgaatatgattagtggcggtaattttggtgcgggttgcactgttagcctgttttcggaactacgaattcaagtgttcatgtacctccagttaatgtttttcaaaaatcgaaggggtaccttaatagtgcttgatgatgtgacagATGATGTGGCGGCTCAATTTTCTGGTCTTCTTTGCCTGTATAGTGCTGAACAATGACTACATGCTTTACTACATTTGTCCAATGCACACACTTTTCACTC

upper sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S5_239V6.1 (Physcomitrella patens), 3'ss of exon 7
gtaagagtcattgaccttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcat--aaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
                |      |   ||||       ||| ||| | | ||  ||| ||     || ||  |     ||   |   ||  ||  |    |||  |   | | |||||||||||||||||| |||||  | ||   |||  | || ||||| || ||||||||||| ||||||||||| || || ||||||||||| || |||||| 
---------------ttcgcgatctgctttgagg-gtgtggaatcaagtatc-gtccattcttagttgcttctggataatcggagtcatgcactgactgggttcgatgatttggcagATGATGTGGCGGCTCAATTTCCTGGTCTTCTTTAGCTGCATTGTACTGAACAATGACTACATGCTCTACTACATCTGTCCAATGCACACTCTCTTCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTT
                             acctaac  putative branch site (score: 2)
                                             tttcttgc  putative PPT
                  ataaacaatata  TA-rich tract