1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttaatgaatttttctcttcatttgttgatatacacttggaaagatttagctgcaagcatgagttgtgtttctatttttgtcttctctatcaacatgcagGACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTCTTATTGCACAATTTGATTTGGACAAGATCAAATCCATGAGACATTGTTG
species | Glycine max |
transcript | GLYMA08G07960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATGGAAAAAGTGAGATAACATTCTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTCEST: gi|6916098|gb|AW397628.1|AW397628
genomic: TGAGCATGGAAAAAGTGAGATAACATTCTATGGAAACTCCTTCATAGCAGgtaatttgac ... caacatgcagGACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTC
EST: TGAGCATGGAAAAAGTGAGATAACATTCTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTCEST: gi|192328548|gb|FK023552.1|FK023552
genomic: TGAGCATGGAAAAAGTGAGATAACATTCTATGGAAACTCCTTCATAGCAGgtaatttgac ... caacatgcagGACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTC
EST: TGAGCATGGAAAAAGTGAGATAACATTCTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTC
genomic: TGAGCATGGAAAAAGTGAGATAACATTCTATGGAAACTCCTTCATAGCAGgtaatttgac ... caacatgcagGACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTC
tttagctgcaagcatgagttgtgtttctatttttgtcttctctatcaacatgcagGACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTCTTATTGCACAATTTGATTTGGACAAGATCAAATCCATGAGACATTGTTG
tttctatttttgtctt CT-rich tract
tttctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatgaatttttctcttcatttgttgatatacacttggaaagatttagctgcaagcatgagttgtgtttctatttttgtcttctctatcaacatgcagGACCTACTGGAGAAATCATTTCAACTGCTGACGATAAAGACGAAGCTGTTCTTATTGCACAATTTGATTTGGACAAGATCAAATCCATGAGACATTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - ctcttca
- - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - -cacttgg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcaagc