Sequence
atgc intronic sequence ATGC exonic sequencegtacttagtttcttatctcttcaacttttacatctgttatttaatttcatattcatttattggtattccacatataactaccttccaaatttgattgcgatctttttttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGCTGTCTGGGGGTGCAAGAATTCATTACATTTTTCAATCCATCTTTGTGAA
Basic information
species | Glycine max |
transcript | GLYMA08G07160.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 3'ss of exon 8
gtacttagtttcttatctcttcaacttttacatctgttatttaatttcatattcatttattggtattccacatataactaccttccaaatttgattgcgatctttttttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGCTGTCTGGGGGTGCAAGAATTCATTACATTTTTCAATCCATCTTTGTGAA
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---------------gcgacttataatatgaaacggagggagtgtgtc-tattcttttgtttaagctgtatgtgataaattgtgccattttaagttgaaacatttttatgttat-------agCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCTTTGTGGTGGAGCAAGGATCCATTATATTTTTCAATCTATATATGTAAA
upper sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 9
---------------------gtacttagtttctt---atctcttcaacttttacatct---gttatttaatttcatattcatttat-tggtattcc-acatataactaccttccaa---atttgattgcgatctttttttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGCTGTCTGGGGGTGCAAGAATTCATTACATTTTTCAATCCATCTTTGTGAA
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gtaaacatggttctgccttccatatttatattctacggacttgtcctatatttaaatttaatgttattggatcatgtcatctttcttatggtatacttactggtgtccatacttgagcttattttatataactaataatgcattgtttaaaacagCATTCTCTTCAAGGGTGGAGGGAAAAAATGAAGAAATGTCGACTGCTGAGTTGTCAGGCGGAGCACGCATTCACTATATTTTCCAATCCATCTTTGTGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7924507|gb|AW830533.1|AW830533EST: GCTGGACAGGGTGCTCTTCTCCTTAATATTCTTTCAAAATACTGTGATG CATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGC
genomic: GCTGGACAGGGTGCTCTTCTCCTTAATATTCTTTCAAAATACTGTGATGgtacttagtt ... ttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacatataactaccttccaaatttgattgcgatctttttttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGCTGTCTGGGGGTGCAAGAATTCATTACATTTTTCAATCCATCTTTGTGAA
tctttttttcttgtt CT-rich tract
aaatttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttagtttcttatctcttcaacttttacatctgttatttaatttcatattcatttattggtattccacatataactaccttccaaatttgattgcgatctttttttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGCTGTCTGGGGGTGCAAGAATTCATTACATTTTTCAATCCATCTTTGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA