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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgacatatatagtcaacttaatcgacttatttgattcatgttgtgacctaggagaggttttctaaagttttttattcttattttttattgttcgtatagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGA

Basic information

species Glycine max
transcript GLYMA08G06190.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06190.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 8
gttgacatatatagtcaacttaatcgacttatttgattcatgttgtgacctaggagaggttttctaaagttttttattcttattttttattgttcgtatagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGA
                      ||   | |  |||| | || |  | |      |    | || | |  | |||  |      | || ||| |    | ||||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||    || ||||||||| | ||||| || ||  | 
--------------------gtatatgcatgattgaattatatactaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425600|gb|CA937120.1|CA937120
EST:     CTCCTCACGCTGTCTTTAATTTCTTCAAGGATGAAAACAAAAGACCTCAG                         TGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCA
genomic: CTCCTCACGCTGTCTTTAATTTCTTCAAGGATGAAAACAAAAGACCTCAGgttgacatat ... gttcgtatagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacctaggagaggttttctaaagttttttattcttattttttattgttcgtatagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGA
               ttctaaa  putative branch site (score: 2)
             ttttctaaagtttttt  TA-rich tract