1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttgataatgacatagtagattttatgttgttttcaattgaactttttatttcttatacaaaatgttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAGCTAGCTTTGGTTACGACTACATCCTTAGACAG
species | Glycine max |
transcript | GLYMA08G05280.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAG GTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAEST: gi|120533094|gb|EH261227.1|EH261227
genomic: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgat ... ttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA
EST: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAG GTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAEST: gi|192293911|gb|FG986120.1|FG986120
genomic: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgat ... ttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA
EST: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAG GTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAEST: gi|209701653|gb|BW655874.1|BW655874
genomic: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgat ... ttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA
EST: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAG GTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAEST: gi|120533228|gb|EH261361.1|EH261361
genomic: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgat ... ttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA
EST: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAG GTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA
genomic: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgat ... ttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA
ttttatgttgttttcaattgaactttttatttcttatacaaaatgttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAGCTAGCTTTGGTTACGACTACATCCTTAGACAG
tgttcctttc CT-rich tract
ttttcaattgaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgataatgacatagtagattttatgttgttttcaattgaactttttatttcttatacaaaatgttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAGCTAGCTTTGGTTACGACTACATCCTTAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG