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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacaccactttttttcccccttctttaacattgaaatgaaagctttctattatgataacagcatgtaaacttatgtatacagTGTTCTCTCAATTCATATTTGTGGAAAGGACTTGAAGATTGGTTCCACAATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT

Basic information

species Glycine max
transcript GLYMA08G04580.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04580.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 15
gttacaccactttttttcccccttct-ttaacattgaaatg--------aaagctttcta--ttatgataac-agcatgtaaacttatgtatacagTGTTCTCTCAATTCATATTTGTGGAAAGGACTTGAAGATTGGTTCCACAATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
|||   |  | | ||   || ||      || |   | |||        | |||  || |  || | | |   |   | ||   ||   ||| |||  || || |  ||||  || | || || || || ||||  ||||||    |    ||||||||||||||||| ||| ||||||||||||| || ||||||
gttctccttcatattcatcctctagaaccaaaacaaatatgtgttttcaacagccctccaggtttttacactgaatctatatgttttcttatgcagCATTGTCACTGTTCACGTTCGCGGTAAAGATTTAAAGACCGGTTCCGTGCTATACGGTAATCTTCATTTGGTGGATCTGGCAGGAAGTGAGAGAGTAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattgaaatgaaagctttctattatgataacagcatgtaaacttatgtatacagTGTTCTCTCAATTCATATTTGTGGAAAGGACTTGAAGATTGGTTCCACAATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
                         tgataac  putative branch site (score: 2)
                tttctattatgataa  TA-rich tract