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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctagagcagggtcataatcagagttttgatcttcctgttaaaaagAAAAGTGATGTGTGTACAATAATGTATACGAGTGGAACTACAGGTGATCCCAAGGGAGTGTTGATAACCAACGAAAGCATTATTACACTCTTAGCTGGGA

Basic information

species Glycine max
transcript GLYMA08G02620.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02620.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g46750.4 (Oryza sativa), 3'ss of exon 5
--------------------------------------------------------------------------------gtctagagcagggtcat------aatcagagttttgatcttcctgttaaaaagAAAAGTGATGTGTGTACAATAATGTATACGAGTGGAACTACAGGTGATCCCAAGGGAGTGTTGATAACCAACGAAAGCATTATTACACTCTTAGCTGGGA
                                                                                   |      |  || |       | ||    || |||||||| || |||   || | |||  | ||||| ||||||||||| ||||||||||| ||||| ||||| || ||  ||||                                   
ctttctaatttggaaagttgtttcaagagttcattttacacctattttattaggatagcttttcagatattctatttttcacatgacattgtatcttcagGCAGACCAAGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTATAATGTATACCAGTGGAACTACTGGTGACCCCAAAGGTGTACTGATCT---------------------------------

upper sequence: GLYMA08G02620.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G152127_T01 (Zea mays), 3'ss of exon 8
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtctag-agcagggtcataatcagagttttgatcttcctgttaaaaagAAAAGTGATGTGTGTACAATAATGTATACGAGTGGAACTACAGGTGATCCCAAGGGAGTGTTGATAACCAACGAAAGCATTATTACACTCTTAGCTGGGA
                                                                                                                                                                            ||||  | |||||   |||  |||  ||||| |||||    ||  | ||   |||  | |||||||||||||| || |||||||| || |||||||| ||||||||  | |                                    
gtaaggttctcctttcctgaccaaatcacacatggaatgaataagtgcttagttacaagaatattaataatgtgttaaggcatgtttttcatttcaaatttatacatttttgggggcatccttgcgagaaatatgccttgatatatcagttagaaaattattttttttctgttctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGTACAATAATGTACACCAGTGGAACAACTGGTGATCCTAAGGGAGTACTAA------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctagagcagggtcataatcagagttttgatcttcctgttaaaaagAAAAGTGATGTGTGTACAATAATGTATACGAGTGGAACTACAGGTGATCCCAAGGGAGTGTTGATAACCAACGAAAGCATTATTACACTCTTAGCTGGGA
                                 ttttgat  putative branch site (score: 4)
                                       tcttcctgtt  CT-rich tract
                                             tgttaaaaa  TA-rich tract