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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttttggctagtcacttcacttgcacattctttattgatcaagttaattacctgagaaatacttgaaactaaaatgatatgtatgctttgatcaaaatctaactgaggaatttctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGGTTGCCAATGGAAAAACTTATTACAGATACTCAACAGTCGTGACTAACAA

Basic information

species Glycine max
transcript GLYMA08G02610.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440190|gb|BE440700.1|BE440700
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
EST: gi|22524879|gb|BU083690.1|BU083690
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
EST: gi|19270738|gb|BM886994.1|BM886994
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
EST: gi|10233073|gb|BE802018.1|BE802018
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTGCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCANGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
EST: gi|22524818|gb|BU083629.1|BU083629
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
EST: gi|10231822|gb|BE800710.1|BE800710
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
EST: gi|17400183|gb|BM176965.1|BM176965
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
EST: gi|10847469|gb|BF070151.1|BF070151
EST:     TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAG                         CTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG
genomic: TGTTACCAAGCCTCAACCAACCCCCAGTCCCAAGACAACTCCTTCTCCAGgtactttttt ... tctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaaatgatatgtatgctttgatcaaaatctaactgaggaatttctctttcagCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAAGGACCACCTCATGGGTTGCCAATGGAAAAACTTATTACAGATACTCAACAGTCGTGACTAACAA
                             atctaac  putative branch site (score: 2)
                                           tttctctttc  putative PPT
                          aaaatctaa  TA-rich tract