Sequence
atgc intronic sequence ATGC exonic sequencegtacatggaagctctcacgcagttatttcctttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGACAAGGATCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
Basic information
species | Glycine max |
transcript | GLYMA08G01750.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g03820.3 (Oryza sativa), 3'ss of exon 8
gtacatggaagctctcacgcagttatttcctttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGACAAGGATCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
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----gtgattgctttattgcttttaaaagtacat-tgttttgttgtatgaagttgccaacaacatcattcatgatct----gcagCCATATTTGGACTGATACTGACAACAACCGCTCAGGGATGCTTCCTTTTGTGTTCGATGACTCATTTGG
upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os07g27790.1 (Oryza sativa), 3'ss of exon 8
gtacatggaagctctcacgcagttatttcctttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGACAAGGATCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
| | | || || || ||| ||||| || | || | ||| | | ||||||||||||||||||||||||||| | ||| |||| ||||| |||||||| || |||||||| |||||
----------gtgattgctttattgcttttaaaagtacattgttttgttgtatgaagttgccaacatcattcatgatctg--cagCCATATTTGGACTGATACTGACAACAACCGCTCAGGGATGCTTCCTTTTGTGTTCGATGACTCATTTGG
upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 3'ss of exon 8
gtacatggaagctctcacgcagttatttcctttcacactttgcatt-gttaaggtgccttatc-cacttttcatatgcttggaacagCCATATTTGGACTGATACTGACAAGGATCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
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--gtatctagattcagttgttatgatccccgatatctttttgaattagtttccctcccaccttataactctggtatgttttga-cagCCACATATGGACAGACACTGACAAGGACCGCACAGGAATGCTACCATTTGTTTTCGATGACTCTTTTGG
upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 8
------------------------------gtacatggaagctctcacgcagttatttcctttcaca----ctttgcattgttaaggtgccttatccactt---ttcatatgcttggaacagCCATATTTGGACTGATACTGACAAGGATCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
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gtttctaaaattttttttgttgttgctttcatattcttctgtttgttttccattgtcttctattatcgattctttctttagacaggcagctttgttttattgatccttttttatttaaacagCCAAATTTGGACTGATACCGATAATAACCGTACTGGCATGCTTCCTTTTGTTTTTGATGGCTCCTTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGACAAGGATCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
ttttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatggaagctctcacgcagttatttcctttcacactttgcattgttaaggtgccttatccacttttcatatgcttggaacagCCATATTTGGACTGATACTGACAAGGATCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC