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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctcatctcatagctgtacctctgaatatataattccatccccatgcatccctggaggttacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAAGCTTTTTCTCATCTTCTTGCCAACAATATTGATGATCATGTCAAAATTT

Basic information

species Glycine max
transcript GLYMA07G39320.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G04340.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtctcatctcatagctgtacctctgaatatataattc--catccccatgcatccctggaggttacttatttg-aatttactttattgt--gcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAAGCTTTTTCTCATCTTCTTGCCAACAATATTGATGATCATGTCAAAATTT
|| |||    |||  |     |  ||   | | |   ||||  |||  |  |  ||    |||   |  | | |   | |  || || ||||   |||   |||||| || ||| | || |||||||| ||| |||||||||| ||||||||||| ||||||||  ||||| | ||| |||||| |||||| ||||||
gtgagttc--tcttgt-----tctctaaaattgttccattcttcatgacattaaatatgaggaacattttgactaacagtggacctttttgttcacagAGATTTCATAAAATCGCTGATACAAGGTTTGCTAGCCGGTATTGCGTTGAAGCTTTTCCTCATCTTTCTGCCAGCCATACTGATGACCATGTCCAAATTT

upper sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G22120.5 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtctcatctcatagctgtacctctgaat-atataattccatccccatgcatccctggaggtt-acttatttgaatttactttattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAAGCTTTTTCTCATCTTCTTGCCAACAATATTGATGATCATGTCAAAATTT
|| ||| |    || |  || |  ||||   | | || |    | |   |   ||  ||   | |  ||| | |||  |||  ||||   ||||||   ||||| || ||| | || |||||||| || || ||||||||| |||||||||| |||  |||  ||||| | || |||||||||||||| ||||||
gtgagtttttcttctttactctctctcttcttgacatcagataacctgaaaaaattactaatgatggactgacttg--tttggttta--atgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAAGCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAATTT

upper sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtctcatctcatagctgtacctctgaatatataattc-catccccatgcatccctggaggttacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAAGCTTTTTCTCATCTTCTTGCCAACAATATTGATGATCATGTCAAAATTT
               ||| |  |      | | | | | |  |     || | ||         ||   |  ||||     |||   |||||||    || || || || || || ||||||||||| ||||||||||  |||||||| ||| | || ||| ||||||||||||||||||||||||| ||||| 
--------------gtaggtacattctcaagttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtgtgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301806|gb|FG997678.1|FG997678
EST:     ATTGAGGGAATCCGCAAAAGAGCACCATGGTTAAATCCTCTTATTGATAT                         TCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAA
genomic: ATTGAGGGAATCCGCAAAAGAGCACCATGGTTAAATCCTCTTATTGATATgtaagtctca ... tattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAA
EST: gi|26058196|gb|CA801110.1|CA801110
EST:     ATTGAGGGAATCCGCAAAAGAGCACCATGGTTAAATCCTCTTATTGATAT                         TCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAA
genomic: ATTGAGGGAATCCGCAAAAGAGCACCATGGTTAAATCCTCTTATTGATATgtaagtctca ... tattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccatccccatgcatccctggaggttacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAAGCTTTTTCTCATCTTCTTGCCAACAATATTGATGATCATGTCAAAATTT
                                      tttacttt  CT-rich tract
                         ttacttatttgaattt  TA-rich tract