1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtgtgatgtctaaggaaaatgggtgcatcaatttttaacactaattgatatatgtagaaggaaataatttaatggaatctgttgatttttcattttacagAGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGCTGGGTCACAGCTGTAAGGGCTTTAAG
species | Glycine max |
transcript | GLYMA07G39030.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGACCGTTGTATCATACTTGAAGGAGATAATCGAATTACAGCTCCCAAG AGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGCEST: gi|51337411|gb|CO981277.1|CO981277
genomic: CTGACCGTTGTATCATACTTGAAGGAGATAATCGAATTACAGCTCCCAAGgtagtgtgtg ... cattttacagAGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGC
EST: CTGACCGTTGTATCATACTTGAAGGAGATAATCGAATTACAGCTCCCAAG AGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGCEST: gi|15288181|gb|BI472072.1|BI472072
genomic: CTGACCGTTGTATCATACTTGAAGGAGATAATCGAATTACAGCTCCCAAGgtagtgtgtg ... cattttacagAGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGC
EST: CTGACCGTTGTATCATACTTGAAGGAGATAATCGAATTACAGCTCCCAAG AGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGC
genomic: CTGACCGTTGTATCATACTTGAAGGAGATAATCGAATTACAGCTCCCAAGgtagtgtgtg ... cattttacagAGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGC
tgatatatgtagaaggaaataatttaatggaatctgttgatttttcattttacagAGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGCTGGGTCACAGCTGTAAGGGCTTTAAG
tgttgat putative branch site (score: 4)
tttttcatttt CT-rich tract
aaataatttaatggaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatgtctaaggaaaatgggtgcatcaatttttaacactaattgatatatgtagaaggaaataatttaatggaatctgttgatttttcattttacagAGTGTGGCTGATAGAGTTTGTCTTGGTCTCATTCCATCTAGTGAGCTTAGCTGGGTCACAGCTGTAAGGGCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- -tgatgtc
- - - - - -aaggaaaa
- - - - - - - - - -tgggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - tatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg