1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcttctgttacattccaaaactataacaaaatgaaattgaaaaacaattgcttatatcaatattgcttgtatttatgtaacacaggctgggtattgcagGTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATG
species | Glycine max |
transcript | GLYMA07G38920.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGGCGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAGCTCAATGAG GTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTEST: gi|31467919|gb|CD409947.1|CD409947
genomic: TGAGGCGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAGgtatgagcat ... ggtattgcagGTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATT
EST: AGGAAGAAGGAAGAAACTCAATGAG GTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTEST: gi|26268856|gb|CA819919.1|CA819919
genomic: AGGAAGAAGGAAGAAACTCAATGAGgtatgagcat ... ggtattgcagGTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATT
EST: TGAGGCGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAG GTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATT
genomic: TGAGGCGCTTCCCAATTGAATCTAAAGGAAGAAGGAAGAAACTCAATGAGgtatgagcat ... ggtattgcagGTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATT
caattgcttatatcaatattgcttgtatttatgtaacacaggctgggtattgcagGTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATG
atgtaac putative branch site (score: 3)
ttatatcaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttctgttacattccaaaactataacaaaatgaaattgaaaaacaattgcttatatcaatattgcttgtatttatgtaacacaggctgggtattgcagGTTGGATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG