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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaattttctctgaaacttggccacctttttagtgtaaataattcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA

Basic information

species Glycine max
transcript GLYMA07G38160.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 8
gtaagaattttctctgaaacttggccacctttttagtgtaaataattcccatg--------ctaaccgatttatttctttga------cagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA
||  |  | | || |||  |     ||   |||   | ||  |   |   ||          || |   ||| ||| |||||      ||| |  |   ||| || | |||||| || || |||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| |
gtgtgcctctgctttgatgcagtatcaaaatttgcatatagtttcattttatagtttgattttatctactttgtttgtttgatattggcagTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAA

upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 3'ss of exon 7
-------------------------gtaagaattttct---ctgaaacttggccacct---ttttagtgtaaataat--tcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA
                          ||   ||  |      |  | |   | || ||   ||| | |||||   ||  ||  ||  |||||  ||| ||| | || ||| |  ||  ||| ||||  ||||| || || |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||| || || |||||||
gtaagcaccctgtactattagcatcatatagatcctgcagatttgagcaatgtcagctaaatttaattgtaatggataatctgatattaacctgtttctttttgtggcagTTGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCA

upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G027851_T03 (Zea mays), 3'ss of exon 6
-----------gtaagaattttctctgaaactt--ggccacctttttagtgtaaataattcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA
            | |||  |  |   | || |   |       | ||| | |    | |  |  || | |   || |||  | ||  |||||  |   | | |||| |||||| || || |||||||||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| |||||||
gtgcacctctgatcagatgtggcaagggaattcacgcttgttgtcttactctcttaactgactctgttcat--atatatggcatttgcagCTGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCA

upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 9
------------------------gtaagaattttctctgaaacttg-gccacctttttagtgtaaataattcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA
                         |  || |||||| | |  |||  || | |    |  |   || | ||    | ||||    ||  |    ||  ||||| ||     | ||||  ||||| ||||| |||||||| || || || ||||| || ||||| ||||||||||||||||| ||||| || || || ||||
cttatttttgtgtagcatgcactgatctgagttttctgttatccttttgcaaacaacatgataccaagatttgt--ttctaatattttcttccaattttcagCTGTTGGACCTGAGTGGAATTCTTACTGTCTTCTTCTGTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGTTCTAGGGTTACCACCA

upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 3'ss of exon 9
---gtaagaattttctctgaaactt-ggccacctttttagtgtaaataattcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA
    ||||||   | |   |   || ||  || |||||      |  || |   |   | |   |  ||| || ||  ||||||||    || ||  | ||  ||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |  || |  || || || |
gtaataagaaaaatttgaaacgttttggttacattttttccaacagaaaatgaaaacatgat--acatatatcctttgcagCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAA

upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------------------------gtaagaattttctctgaaa-cttggccacctttttagtgtaaataattcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA
                                            ||  |   ||| | |  |  ||||  | ||    ||     |   |     ||  |       |||||| | | |||||| || | ||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||
gtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacagCTGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccacctttttagtgtaaataattcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA
                             tgctaac  putative branch site (score: 1)
                                       tttatttcttt  putative PPT
       tttttagtgtaaataa  TA-rich tract