1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttaaacctcgtcaaattggctgaggaagcatgatttttatgactaaattttcatatggtttctgaattgaattcctctttccataattccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAAAAGCTAACTAAGCAAAAGAATATTCATTTGTATTTCCATATTGGATTT
species | Glycine max |
transcript | GLYMA07G37640.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAAATATGCCGACTTCTATAGCAGTAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAEST: gi|193552438|gb|FK509461.1|FK509461
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAEST: gi|193616169|gb|FK570153.1|FK570153
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAEST: gi|193335775|gb|FK299705.1|FK299705
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAEST: gi|193326774|gb|FK288651.1|FK288651
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACTT-CGGCGCAGAACAGCTAAAGAAATCTTGAGATTAEST: gi|208305883|gb|GE109562.1|GE109562
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACATTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAEST: gi|193550632|gb|FK508467.1|FK508467
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAEST: gi|193700539|gb|FK635084.1|FK635084
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACAATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTEST: gi|193689585|gb|FK628828.1|FK628828
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACAC-ATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATT
EST: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
taaattttcatatggtttctgaattgaattcctctttccataattccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAAAAGCTAACTAAGCAAAAGAATATTCATTTGTATTTCCATATTGGATTT
gactaaa putative branch site (score: 2)
ttccattt putative PPT
aattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaacctcgtcaaattggctgaggaagcatgatttttatgactaaattttcatatggtttctgaattgaattcctctttccataattccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAAAAGCTAACTAAGCAAAAGAATATTCATTTGTATTTCCATATTGGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA