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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttaaacctcgtcaaattggctgaggaagcatgatttttatgactaaattttcatatggtttctgaattgaattcctctttccataattccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAAAAGCTAACTAAGCAAAAGAATATTCATTTGTATTTCCATATTGGATTT

Basic information

species Glycine max
transcript GLYMA07G37640.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208165713|gb|GD963701.1|GD963701
EST:     TCAAATATGCCGACTTCTATAGCAGTAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|23735206|gb|BU765872.1|BU765872
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193552438|gb|FK509461.1|FK509461
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193616169|gb|FK570153.1|FK570153
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193335775|gb|FK299705.1|FK299705
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193326774|gb|FK288651.1|FK288651
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTT-CGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|208305883|gb|GE109562.1|GE109562
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACATTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193550632|gb|FK508467.1|FK508467
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
EST: gi|193700539|gb|FK635084.1|FK635084
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACAATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATT
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACAC-ATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATT
EST: gi|193689585|gb|FK628828.1|FK628828
EST:     TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAG                         GAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA
genomic: TCAAATATGCCGACTTCTATAGCAGAAACTTGGGGCTATGTTTCAACCAGgtaggatatc ... ccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattttcatatggtttctgaattgaattcctctttccataattccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAAAAGCTAACTAAGCAAAAGAATATTCATTTGTATTTCCATATTGGATTT
 gactaaa  putative branch site (score: 2)
                                           ttccattt  putative PPT
                     aattgaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttaaacctcgtcaaattggctgaggaagcatgatttttatgactaaattttcatatggtttctgaattgaattcctctttccataattccatttgtagGAACACATGTCTTACTTTCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAAAAGCTAACTAAGCAAAAGAATATTCATTTGTATTTCCATATTGGATTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA