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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaacatgtatgatattttacttcaccattgaaagcacagcagatcatgctaactggaaggtttctttaaacttgcagGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGAT

Basic information

species Glycine max
transcript GLYMA07G36550.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 3'ss of exon 8
gttagtaacatgtatgatattttacttcaccattgaaagcaca-gcagatcatgctaactggaaggtttctttaaacttgcagGATATACTGACC---CAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGAT------
|| |||    | | | |  ||||| |      |||| ||   |   | ||  |  ||    | | | |   |  || || |    | | | | |    |  ||||  | ||| |  ||||  |||| ||||||||||||||||| || || || || |||||||||||||||||  | || |||||      
gtaagttttctctgtaaacttttagtgagt--ttgatagtttatatatatatttttagtaaggatgatcaatgtaatttaccttgtgtgcagGCTATACTGATCCATCTAAACCTGATCTCCCTCGATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGATTTATGC

upper sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 8
gttagtaacatgtatgatattttacttcaccattgaaagcacagcagatcatgc-taactggaaggtttcttt-------aaacttgcagGATATACTGACC-----CAA--ATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGAT------
|| ||| | |      ||||||   || ||||    || || |   | |||||| | ||  ||  | |  ||        ||||||| |    | | |  |      |||  |||| || ||| | || ||| | | |||||||||||||||||| || || || |||||||| |||||||||||||| || ||| |      
gtaagtgagaacccaaatattt--gtttaccaagataaaca-atttgctcatgcctcacaagacagctgtttagaaaacaaaacttgaaaacaacaattgcagGTTACAATGATCCCGCAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGC

upper sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 8
gttagtaacatgtatgatattttacttcaccattgaaagcacagcagatcatgctaactggaaggtttctttaaacttgcagGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGAT
    ||||    ||||   ||  | ||      |   |||    |   | || |||             |  ||| ||||||| || ||||| ||| ||||  | |||  | |  |||| || ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
----gtaagcaatatgcctttgcattttgtttatactagcttgactt-tgatactactaaacccacacgtaaaaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519074|gb|BM188116.1|BM188116
EST:     GATACCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACTTTCTTTCTCG                         GATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGT
genomic: GATACCTGGAGTCTTTGAATGGGTTTGGAGTCCATTTACTTTCTTTCTCGgttagtaaca ... aaacttgcagGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccattgaaagcacagcagatcatgctaactggaaggtttctttaaacttgcagGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGAT
                        tgctaac  putative branch site (score: 1)
                                      tttcttta  putative PPT
                                      tttctttaaa  TA-rich tract