1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagtatatttggaggaaagttttttgttattttttttcacttgttgataacatatttgtggttttctcatctgtttttgcttgcctcattgtgcgttatacttgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCAAGGCTTTGGGACGATG
species | Glycine max |
transcript | GLYMA07G33620.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAG TGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATEST: gi|254348110|gb|GR851789.1|GR851789
genomic: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGgtaaagtata ... tgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATAT
EST: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAG TGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATEST: gi|209709198|gb|BW657167.1|BW657167
genomic: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGgtaaagtata ... tgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATAT
EST: CTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAG TGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATEST: gi|209717947|gb|BW666140.1|BW666140
genomic: CTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGgtaaagtata ... tgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATAT
EST: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAG TGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATEST: gi|214006556|gb|DB986349.1|DB986349
genomic: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGgtaaagtata ... tgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATAT
EST: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAG TGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATEST: gi|7795135|gb|AW780532.1|AW780532
genomic: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGgtaaagtata ... tgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATAT
EST: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAG TGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATAT
genomic: GTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGgtaaagtata ... tgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATAT
gtggttttctcatctgtttttgcttgcctcattgtgcgttatacttgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCAAGGCTTTGGGACGATG
ttatacttgtaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtatatttggaggaaagttttttgttattttttttcacttgttgataacatatttgtggttttctcatctgtttttgcttgcctcattgtgcgttatacttgtaatatagTGGAGCAAGGAAGAAGAGGATAAGTTCAAAGGGAAAGTGGTGGAGGCATATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCAAGGCTTTGGGACGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG