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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattattctttttttcttttctttcatccagttgagcacgcaaatacaatcattttatatgtaagagaaatctgttttgtattagtaaaatggtctcttgattttttactgctggctgaagttattaagtagtgtaagtagtatagatttcgttttggggtctcatgtaatggtttttaaatggcaatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTG

Basic information

species Glycine max
transcript GLYMA07G32480.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32480.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G29030.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaattattattctttttttcttttctttcatccagttgagcacgcaaatacaatcattttatatgtaagagaaatctgttttgtattagtaaaatggtctcttgattttttactgctggctgaagttattaagtagtgtaagtagtat----agatttcgttttggggtctcatgtaatggtttttaaatggcaattttt-agGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTG
                                                                                                  | |  ||||| |  |     || |||| || | || |  || | ||   ||    |   |||    |   | | ||  || || | || ||||   | |||   |||| |||||| |||||||||||||| |||| ||||| ||||| || | ||| ||||||||  |||  
--------------------------------------------------------------------------------------------------tatggtgattgtaaa-----ggttgaaatt-taaaattctgaaggtttcattttgatgattcaaaattatgccacaactactgatgttcaaatattattttcccagGTTTCAGATACAGATCATATTGACAGGTTTATATCATGCCTGCAAACGGCCCTTCCATTCTTTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574959|gb|CX547934.1|CX547934
EST:     AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAAT                         GTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
genomic: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattatta ... caatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
EST: gi|26058897|gb|CA801811.1|CA801811
EST:     AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAAT                         GTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
genomic: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattatta ... caatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
EST: gi|58016932|gb|CX703674.1|CX703674
EST:     AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAAT                         GTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA
genomic: AGCTTATTGGAATCATTGAAGGGCAAGCTGATTTAGATGCACAGTTCAATgtaattatta ... caatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatagatttcgttttggggtctcatgtaatggtttttaaatggcaatttttagGTATCAGATGCAGATCATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTG
                                                ttttt  CT-rich tract
                            taatggtttttaaat  TA-rich tract