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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgactatgtttgggtctatcatctgaggttttactggaggattagacttttggtgtatttggtgaattaattgtactaagataatgtctttgcagATGTATCACAGAGATGATCGCCCAAGATTAAACCATATGCTCTCTAGTTATCGTTCTTTTTCTG

Basic information

species Glycine max
transcript GLYMA07G31430.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259715|gb|BE347862.1|BE347862
EST:     CCATGACAGCCACCAAAGATTGCCAAAGGAG                         ATGTATCACAGAGATGATCGCCCAAGATTAAACCATATGCTCTCTAGTTAT
genomic: CCATGACAGCCACCAAAGATTGCCAAAGGAGgtaatgacta ... gtctttgcagATGTATCACAGAGATGATCGCCCAAGATTAAACCATATGCTCTCTAGTTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagacttttggtgtatttggtgaattaattgtactaagataatgtctttgcagATGTATCACAGAGATGATCGCCCAAGATTAAACCATATGCTCTCTAGTTATCGTTCTTTTTCTG
                        aattaat  putative branch site (score: 3)
                                            tgtcttt  putative PPT
                        aattaattgtactaag  TA-rich tract