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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgaagcattcatgagaacaataggcaaatatgcatgcatattttcatctttttattttgccttactgttgatcttgaatatgctgctctttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG

Basic information

species Glycine max
transcript GLYMA07G31090.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g38590.1 (Oryza sativa), 3'ss of exon 8
----------------------------attgaa----gcattcatgagaacaataggcaaatatgcatgcatattttcatctt---tttattttgccttactgttgatcttgaatatgctgctctttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
                            |||  |    |||||  |  | |  ||        | |  | |   | || |  |     | || |  ||||       |  ||   | |||    | | |   ||||||||| |||||| ||||||||||||||||||||||||| ||  ||
gtaaatgaaatattactacttgtcacacattataatttgcattttttgggatcattttttgtgaggttttctgttgtttagttcgaactaatatctccttggctcataatttatttctgcaaaacgtatca-cagGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG

upper sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 3'ss of exon 7
attgaagcattcatgagaacaataggcaaatatgcatgcatattttcatctttttattttgccttactgttgatcttgaatat-gctgc--tctttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
          |  |||  | | |       | ||  |   |  ||||  |    |||||   ||||   ||||  | |  ||| | | |  | | | || ||||| ||| ||||||||||| |||||||||||||||||||||||  ||
---------gttgtgaatatact-------tgtgtttttgttatttctgcacactatttcttcttatatttgacatagtgtattgttacaatgtatgttgcagGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG

upper sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G169773_T02 (Zea mays), 3'ss of exon 7
attgaagcattcatgagaacaataggcaaatatgcatgcatattttcatctttttattttgccttactgttgatcttgaatatgctgctctttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
   |  |  |  |||       |  |    ||| |||||| |||  || | || ||   | |   | |    ||  ||  |||     | | | || ||||| ||||||||||||||| ||||| ||||||||| ||||||| || 
---gttgtgtgtatgtttctgctgtgtc--tattcatgcacattgcca-cattgtaccctcctccatttcacattatgtttatttaaatgtgtattacagGACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTT

upper sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 8
attgaagcattcatgagaacaataggcaaatatgcatgcatattt--tcatctttttattttgccttactgttgatcttgaatatgctgc--tctttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
     | ||| |||  |     |  |||  ||||  || || | |  | ||  |||||  |  |  |  | |      |||  |  || |    ||| || ||||||||||||||||||||| ||||||||||||||| |||||||| ||
---ccaccatccatatgtgtg-tgtgcatgtatgtttgtatgtgtgtttatggttttacctgacaattttctgttatctgatcacactacaacatttcttacagGAATGAAAGTGCTTTGAAGTTTGGATGGTTTTTCATGTTTTATTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315267|gb|GR830260.1|GR830260
EST:     GTT-CTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|10255230|gb|BE822996.1|BE822996
EST:     GTGGTATCGCCCATTATATCGTGCTTTTAN                         NAATGNNNNTGCTTTGAAATTTNNNTGGTTTTTCCTGTTTTATCTG
genomic: GTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|23728768|gb|BU762445.1|BU762445
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|10255778|gb|BE823488.1|BE823488
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|6964344|gb|AW433037.1|AW433037
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
EST: gi|13311994|gb|BG405645.1|BG405645
EST:     GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG                         GAATGAAAGTGCTTTGAAATTTGGATGGTTNTTCCTGTTTTATCTG
genomic: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... tttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatctttttattttgccttactgttgatcttgaatatgctgctctttttttcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG
                                     tgctgctctttttttc  CT-rich tract
     tttttatttt  TA-rich tract