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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttagtcatcccttttatctggtttcttatctcttcaacttttacatctgttatttaatttcatttttttcatattcatttattggtattccttatataactaccttccaaatttgattatgtcatcttttcttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATTTGAGCTTTCTGGGGGTGCACGAATTCATTACATTTTTCAATCCATCTTTGTGAA

Basic information

species Glycine max
transcript GLYMA07G30150.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 3'ss of exon 8
gtacttagtcatcccttttatctggtttcttatctcttcaacttttacatctgttatttaatttcatttttttcatattcatttattggtattccttatataactaccttccaaatttgattatgtcatcttttcttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATTTGAGCTTTCTGGGGGTGCACGAATTCATTACATTTTTCAATCCATCTTTGTGAA
                                      | |||| || || ||  |   |         | |   ||||| ||| ||  ||  |  ||| | |  |  |     |||| |   ||  |  ||||  | || |       ||| |||||||| ||||| |||||||| |||||||| || || ||| ||||||||| ||| || ||| | || ||||| ||||||||||| || | ||| ||
-------------------------------------gcgacttata-atatgaaacggag----ggagtgtgtctattcttttgtt--taagctgtatgtgataaattgtgccattttaagttgaaacatttttatgttat-------agCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCTTTGTGGTGGAGCAAGGATCCATTATATTTTTCAATCTATATATGTAAA

upper sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 9
--gtacttagtcatcccttttat-ctggtttcttatctcttcaacttttacatctgttatttaatttcattt--ttttcatattcatttattggtattccttata-taactaccttccaaatttgattatgtcatcttttcttc-ttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATTTGAGCTTTCTGGGGGTGCACGAATTCATTACATTTTTCAATCCATCTTTGTGAA
    || | ||  | ||||  ||  |  | |  ||     |    |  || || |   ||||||| | |||   |  |   ||   | |  |||||| | |  |  |  | |   |  |  ||   |||| | |    |  | | ||||| |||||||||||||| || | ||| |||||||| ||||| || ||||| ||   |||| | || || || ||||| ||||| || ||||| |||||||||||||||||
gtaaacatggttctgccttccatatttatattctacggacttg--tcctatatttaa-atttaatgttattggatcatgtcatctttcttatggtatacttactggtgtccatacttgagcttattttatataactaataatgcattgtttaaaacagCATTCTCTTCAAGGGTGGAGGGAAAAAATGAAGAAATGTCGACTGCTGAGTTGTCAGGCGGAGCACGCATTCACTATATTTTCCAATCCATCTTTGTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146674|gb|AW508596.1|AW508596
EST:     GCTGGACAGGGTGCTCTTCTCCTTAATATTCTTTCAAAATACTGTGATG                         CATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATTTGAGC
genomic: GCTGGACAGGGTGCTCTTCTCCTTAATATTCTTTCAAAATACTGTGATGgtacttagtc ... ttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATTTGAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatataactaccttccaaatttgattatgtcatcttttcttcttgttgaaaacagCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATTTGAGCTTTCTGGGGGTGCACGAATTCATTACATTTTTCAATCCATCTTTGTGAA
                             tcatcttttcttcttg  CT-rich tract
                aaatttgattatgt  TA-rich tract