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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttgtctactattcctccctttattatcataacacatattgaagtatgtccattgtatttgtatgccacaaatttcgatcattctatgctcacttatgttcatcatttggcgcttggaatgtatttatcagGCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTGCTGAGTCTCATTCAGTTGTTACCCAGAAATCAGTTCAGGAAAAAGCCAC

Basic information

species Glycine max
transcript GLYMA07G29660.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31470908|gb|CD412936.1|CD412936
EST:     AAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAG                         GCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
genomic: AAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAGgttggttgtc ... tatttatcagGCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
EST: gi|207756162|gb|GD727061.1|GD727061
EST:     CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAG                         GCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
genomic: CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAGgttggttgtc ... tatttatcagGCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
EST: gi|208303897|gb|GE108206.1|GE108206
EST:     CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAG                         GCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
genomic: CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAGgttggttgtc ... tatttatcagGCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
EST: gi|51335549|gb|CO979415.1|CO979415
EST:     CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAG                         GCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
genomic: CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAGgttggttgtc ... tatttatcagGCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
EST: gi|9901574|gb|BE610542.1|BE610542
EST:     CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAG                         GCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG
genomic: CCAAAAAATGATAGGATATGTGGAAGCCGTTTCCAACAGTTTTATTACAGgttggttgtc ... tatttatcagGCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcattctatgctcacttatgttcatcatttggcgcttggaatgtatttatcagGCATATCTGATGTAACTGAGGCCTATCAAGCTGCCATTAAAGCTGTTACTGCTGAGTCTCATTCAGTTGTTACCCAGAAATCAGTTCAGGAAAAAGCCAC
          tgctcac  putative branch site (score: 2)
                                         aatgtatttat  TA-rich tract