1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcaattccaaggcatgctcctcttatttttttttctttctttctttcctgaaatatgatggcatcaactttcaattggaggctaatattgttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTGCCGGCCGATCTCATGGTTGAGAACACGATGAACAGGCAATTTGAGGAGC
species | Glycine max |
transcript | GLYMA07G29500.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAG AGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTGEST: gi|31472689|gb|CD414717.1|CD414717
genomic: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGgtcagttttt ... ttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTG
EST: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCCGACCCTGCACAGG AGGATAAGTATCCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTEST: gi|254328432|gb|GR835397.1|GR835397
genomic: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACA-Ggtcagttttt ... ttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCT
EST: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAG AGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTG
genomic: CTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGgtcagttttt ... ttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTG
tcctgaaatatgatggcatcaactttcaattggaggctaatattgttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTGCCGGCCGATCTCATGGTTGAGAACACGATGAACAGGCAATTTGAGGAGC
ggctaat putative branch site (score: 3)
ttgtttt CT-rich tract
taatattgttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaattccaaggcatgctcctcttatttttttttctttctttctttcctgaaatatgatggcatcaactttcaattggaggctaatattgttttaaatagAGAATAAGTATTCCCGAGATTCGAAACCACGAATGGTTTTTGAAGAACCTGCCGGCCGATCTCATGGTTGAGAACACGATGAACAGGCAATTTGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - ttccaag
- - - - - - - - ctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggagg