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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaacttttggccagtaggcatgattaaatcctgtgttggcatttatgtgagccttcatgtcatgcattgcattggttgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATCGAATCACAACTCATCCACTCCAAGAATTGCAGCCTACAAAAAC

Basic information

species Glycine max
transcript GLYMA07G18500.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtaaagaacttttggccagtaggcatgattaaatcctgtgttggcatttatgtgagccttcatgtcatgcattgcattggttgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATCGAATCACAACTCATCCACTCCAAGAATTGCAGCCTACAAAAAC
               |      ||||  |    |     | |||  ||  ||| ||    ||||  || |  | |   |||   |     || |||| | | |||||||||| ||||| || || |||||||||||  |||| ||||||||||| |||||  | |||||| | |||||  | || ||  ||| ||| || || ||
tttcagtgatgtagattggtgcctttgtggttttccctgttattggat--tgtatttttttttac-tgggtttcctcttcacatac-atgtttgttg-tgtgcagGTGATTTTGTTGCCCATATTAAATTCACAGTTCTGTTAATGCCAAATGGGTCGGACAGGATCACATCCCATCCTTTGCAGGAGCTGCGGCCCACCAAGAC

upper sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 3'ss of exon 7
-------------------------------------------gtaaagaacttttggccagtaggcatgattaaatcctgtgttggcatttatgtg---agccttcatgtcatgcattgcattggttgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATCGAATCACAACTCATCCACTCCAAGAATTGCAGCCTACAAAAAC
                                             |  | |       | |||   ||  ||||  |  |  | |    | ||| |    |   || | |       |||  |||| |    | ||||||| |  ||||| |||||||||||||| ||| || | |||||||||||||| ||||| || ||| ||||| |||| || ||| ||||||||||||| ||
gtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggcta---tgcagGTGACTATGTTGCTCACATCAAATTCACTGTCCTGCTAATGCCAAATGGATCAGATCGGATTACATCTCATTCACTGCAGGAACTGCAGCCTACAAAGAC

upper sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ10608 (Selaginella moellendorffii), 3'ss of exon 7
gtaaagaacttttggccagtaggcatgattaaatcctgtgttggcattta--tgtgagccttcatgtcatgcattgcattggttgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATCGAATCACAACTCATCCACTCCAAGAATTGCAGCCTACAAAAAC
                                     || |     ||||  | | || |||    ||   | ||   ||  |   ||  |||| |||||||| || |||||||| || || || ||||||||||||||||| ||||||||||||||    ||     | |||||  | || ||  |    ||
-------------------------------------gtctccctctttacttttcagtctttggatcgaac-ttaagtttctcttttcgcagGGGATTTGGTAGCTCACATCAAGTTTACGGTGTTGTTGATGCCAAATGGCTCGGATCGAATCACCGGACACAGCGTTCAAGACGTACAACCATCCTCGAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208246133|gb|GE045187.1|GE045187
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208116126|gb|GD919953.1|GD919953
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|193474676|gb|FK441009.1|FK441009
EST:     TGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: TGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208277480|gb|GE079471.1|GE079471
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208046574|gb|GD844314.1|GD844314
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208096019|gb|GD892455.1|GD892455
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208249491|gb|GE044596.1|GE044596
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208239764|gb|GE036764.1|GE036764
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|193422658|gb|FK385875.1|FK385875
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|193429656|gb|FK394534.1|FK394534
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208171284|gb|GD971051.1|GD971051
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|207830557|gb|GD802459.1|GD802459
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|193650453|gb|FK600266.1|FK600266
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|193605333|gb|FK558145.1|FK558145
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|208336200|gb|GE134271.1|GE134271
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|207784767|gb|GD758154.1|GD758154
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|207819192|gb|GD789896.1|GD789896
EST:     TCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: TCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
EST: gi|193628634|gb|FK577218.1|FK577218
EST:     CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG                         GTGATTTTGTTGCACATATCAAATTCACAGTCTTGTTGATGCCAAATGGAT
genomic: CGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTGgtaaagaact ... tgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttggcatttatgtgagccttcatgtcatgcattgcattggttgctttacagGTGATTTGGTTGCGCACATCAAATTCACAGTCTTGTTGATGCCAAATGGATCGGATCGAATCACAACTCATCCACTCCAAGAATTGCAGCCTACAAAAAC
                                            ttgcttt  CT-rich tract
         atttatgt  TA-rich tract