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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctataatgtatgatgcataatgaataatgatgctttgaactgttgcacatagttttacaaagattgcttactttaacaggtgttatgtttcttatctaacctaaaattttaaaattgtaacagGTTGATTGTTTCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGAT

Basic information

species Glycine max
transcript GLYMA07G18160.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18160.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 8
gtaagctataatgtatgatgcataatgaataatgatgctttgaactgttgcacatagttttacaaagattgcttactttaacaggtgttatgtttcttatctaacctaaaattttaaaattgtaacagGTTGATTGTTTCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGAT
                   ||  |   | || |  || | ||   | || |   |  |||   |    |   ||   | ||      |||    |   || |  | |    | ||       ||  |||||||||||||||||||| ||| |  |||||||  | || ||  |  | ||||||||||| || ||||||||||| ||||| |||||||| |||||||||
-------------------gctcacctactagtt-tggtgtgg-tttttacttcttatttactatgtgtctattctctgaaggacctttacaagttgcatttctctttgtttgtt-------tattagGTTGATTGTTTCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335080|gb|CO978946.1|CO978946
EST:     GCAAAATTTG-TTTGGGAATTTTAGG                         GTTGATTGTTTCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAAT
genomic: GCAAAATTTGTTTTGGGAATTTTAGGgtaagctata ... attgtaacagGTTGATTGTTTCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttaacaggtgttatgtttcttatctaacctaaaattttaaaattgtaacagGTTGATTGTTTCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGAT
              ttatgtttcttatcta  TA-rich tract