1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtagttgtacagcatttaagtggcctatttcttaattttttataaagctttaagtgtcctatctgaaatttctttactttgcatttgaatttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCTTTATTGGGAACTAGAGTGGAAAAAATTGCTGCTGGACTTTGGCATACAT
species | Glycine max |
transcript | GLYMA07G16400.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACTGTATGGCCAG TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCTEST: gi|193384494|gb|FK350612.1|FK350612
genomic: GACTGTATGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
EST: CGGCTGGGGACTGTTATTGGCCAG TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCEST: gi|208125852|gb|GD921596.1|GD921596
genomic: CGGCTGGGGACTG-TA-TGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTC
EST: CGGCTGGGGACTGTATGGCCAG TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCTEST: gi|193592326|gb|FK545600.1|FK545600
genomic: CGGCTGGGGACTGTATGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
EST: CGGCCGGGGACTGTATGGCCAG TGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
genomic: CGGCTGGGGACTGTATGGCCAGgtgagtttgc ... tttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCT
aagctttaagtgtcctatctgaaatttctttactttgcatttgaatttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCTTTATTGGGAACTAGAGTGGAAAAAATTGCTGCTGGACTTTGGCATACAT
tttcctct CT-rich tract
aaatttctttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagttgtacagcatttaagtggcctatttcttaattttttataaagctttaagtgtcctatctgaaatttctttactttgcatttgaatttcctctagTGCGGACAAGGGAATAATGCTGATCAGCTAAGACCAACTCTAGTTCCTTCTTTATTGGGAACTAGAGTGGAAAAAATTGCTGCTGGACTTTGGCATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatctg