1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacaactgatgaacgaagggcttaaaattttattgttctctataagcatcacttgtgagatcttaccatatgtgaacttaaatttgtttttcagTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACAGATGAAGTAACTCCTACC
species | Glycine max |
transcript | GLYMA07G15930.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAG TTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCAEST: gi|254328802|gb|GR833174.1|GR833174
genomic: ATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAGgtaacaactg ... tgtttttcagTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCA
EST: ATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAG TTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCAEST: gi|10843532|gb|BF066812.1|BF066812
genomic: ATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAGgtaacaactg ... tgtttttcagTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCA
EST: ATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAG TTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCA
genomic: ATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAGgtaacaactg ... tgtttttcagTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCA
ctataagcatcacttgtgagatcttaccatatgtgaacttaaatttgtttttcagTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACAGATGAAGTAACTCCTACC
atcttac putative branch site (score: 3)
tttgtttttc putative PPT
aacttaaatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaactgatgaacgaagggcttaaaattttattgttctctataagcatcacttgtgagatcttaccatatgtgaacttaaatttgtttttcagTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAACCGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACAGATGAAGTAACTCCTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG