1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtatatctacactctcttttctatttctctcatccctacatccatttaacttttgatcctttacttaatccttgattattcctctttgttttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTATCAGAAGCAAAATTTGCAATGTCAGAGTTATCCAAGGCAGATAGAGGAG
species | Glycine max |
transcript | GLYMA07G09270.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTAEST: gi|254339874|gb|GR857999.1|GR857999
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTAEST: gi|15200276|gb|BI424265.1|BI424265
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGCGTAEST: gi|15200088|gb|BI424166.1|BI424166
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTAEST: gi|192333445|gb|FK023974.1|FK023974
genomic: TTGCCACAGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
EST: AGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAG CAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
genomic: AGCTATGGTCTTCTGCGCAGAGAGTCCACATTGGTTATACAAGgttgatacct ... tttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTA
tttaacttttgatcctttacttaatccttgattattcctctttgttttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTATCAGAAGCAAAATTTGCAATGTCAGAGTTATCCAAGGCAGATAGAGGAG
ttattcctctttgttt CT-rich tract
tttacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatatctacactctcttttctatttctctcatccctacatccatttaacttttgatcctttacttaatccttgattattcctctttgttttgatgtagCAAGGAAGAACTGCTGAAGCAGAAGCTGAGTTTGAGAGGCTTCTTGGTGTATCAGAAGCAAAATTTGCAATGTCAGAGTTATCCAAGGCAGATAGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG